hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05674/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1424  ( 1262 res)   mbg05674

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  242.8    4.8e-69   1
PH       PH domain                                       70.6    3.3e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1     243   351 ..     1    92 []    70.6  3.3e-17
RhoGAP     1/1     473   626 ..     1   155 []   242.8  4.8e-69

Alignments of top-scoring domains:
PH: domain 1 of 1, from 243 to 351: score 70.6, E = 3.3e-17
                   *->vikeGwLlkkg...........gkkswkkRyfvLfndvLlyykdkk.
                        +eGwL+ +   ++++++ +++++ wk+ y+vL++++L++ykd+ +
   mKIAA1424   243    AAREGWLQFRPlvtdkgkrvggSIRPWKQMYVVLRGHSLYLYKDRRe 289  

                   ....kkpkgsipLsgi.qvekvpdnkrkncFeirt.dretlllqaeseee
                   ++++++    i+++ +     ++++kr+n+F+++t+d  + l+qae+ ++
   mKIAA1424   290 qttpSEEEQPISVNAClIDISYSETKRRNVFRLTTsDC-ECLFQAEDRDD 338  

                   rkeWvkaiqsair<-*
                   + +W+k iq+++    
   mKIAA1424   339 MLSWIKTIQESSN    351  

RhoGAP: domain 1 of 1, from 473 to 626: score 242.8, E = 4.8e-69
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl.
                      Pliv+ C+  +e+rGL+  GIyRv+G+ ++i  ++e++++g+++ + 
   mKIAA1424   473    PLIVDICCKLVEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDi 519  

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle
                   +d+++ d +v++slLK F+R+LPePL+t++ y +fie a ++ed+ +rl+
   mKIAA1424   520 QDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYADFIE-ANRKEDPLDRLR 568  

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                    l++l++ LP+++++tL++L ahL+ Va+nse+NkM ++NLAivFgPtL+
   mKIAA1424   569 TLKRLIHDLPEHHFETLKFLSAHLKTVAENSEKNKMEPRNLAIVFGPTLV 618  

                   rppdgdsad<-*
                   r++++ +++   
   mKIAA1424   619 RTSED-NMT    626  

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