hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg14480/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1422  ( 1065 res)   mbg14480

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
BK_channel_a Calcium-activated BK potassium channel a   124.3    2.3e-33   1
Ion_trans_2  Ion channel                                 62.7    7.8e-15   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Ion_trans_2    1/1      85   163 ..     1    81 []    62.7  7.8e-15
BK_channel_a   1/1     302   423 ..     1   146 []   124.3  2.3e-33

Alignments of top-scoring domains:
Ion_trans_2: domain 1 of 1, from 85 to 163: score 62.7, E = 7.8e-15
                   *->illllvlifgtvyyalepeeg.wewsfldalYFsfvTlTTiGYGDiv
                      +ll+lv+++ + + +le   g++  ++l+++YF++vT++T+G+GD++
   mKIAA1422    85    TLLCLVFTGTCGIQHLERAGGnL--NLLTSFYFCIVTFSTVGFGDVT 129  

                   PlstdaGRlftivyiliGiplfllllavlgrflte<-*
                   P+ ++  +l+++++i++ + +  l +  l+ + +e   
   mKIAA1422   130 PKIWPS-QLLVVILICVTLVVLPLQFEELVYLWME    163  

BK_channel_a: domain 1 of 1, from 302 to 423: score 124.3, E = 2.3e-33
                   *->nipkwkwkegideviciaelKlgliAqsclcPGfsTllvNLfrtrsf
                      +++k ++k++ d+v+c++e K++ +A +c+cP  sTl+++L++t+++
   mKIAA1422   302    PENKFHVKFA-DHVVCEEECKYAMLALNCICPATSTLITLLVHTSRG 347  

                   kegeedtaslwkeeLvgnemeletqtlseeWgsgkwfgqynessrnklyl
                    eg+e +++ w ++                    ++ +++ne +++++++
   mKIAA1422   348 QEGQE-SPEQWQRT--------------------YGRCSGNEVYHIRMGD 376  

                   lavpiefvGreFrslsyllyekdgilvigeetrgPffianslnevkraf<
                   ++++ e++G++F+++++++++k+g+ +ig+++ +  +  + ln+++r++ 
   mKIAA1422   377 SKFFREYEGKSFTYAAFHAHKKYGVCLIGLKREE--NKSILLNPGPRHI  423  

                   -*
                     
   mKIAA1422     -    -    

//