hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj05028/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1420  ( 907 res)   mfj05028

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET (Su(var)3-9, Enhancer-of-zeste, Trithora   164.0    1.4e-44   1
BAH      Bromo adjacent homology domain                  93.9    1.8e-23   1
BROMO    bromo domain                                    91.0    1.5e-22   1
PHD      PHD zinc finger                                 34.5    1.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SET        1/1      84   206 ..     1   114 []   164.0  1.4e-44
BROMO      1/1     380   490 ..     1   118 []    91.0  1.5e-22
PHD        1/1     525   567 ..     1    39 []    34.5  1.5e-05
BAH        1/1     599   736 ..     1   163 []    93.9  1.8e-23

Alignments of top-scoring domains:
SET: domain 1 of 1, from 84 to 206: score 164.0, E = 1.4e-44
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                       +le f+ ++kGwG+r++e++++G+fI+ey Ge++++++ +++  ++
   mKIAA1420    84    QCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVseqefrnrmieq 130  

                   ......fylfd.....ciDatranggkGniarfiNHSCePNcelifvevd
                    ++++++y  + +++ +iD+ r    +Gn arfiNHSC+PNce++++ v+
   mKIAA1420   131 yhnhsdHYCLNldsgmVIDSYR----MGNEARFINHSCDPNCEMQKWSVN 176  

                   gfdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                   g           +ri+++Al+d ++G+ELt+dY++ +++    
   mKIAA1420   177 G----------VYRIGLYALKDMPAGTELTYDYNFHSFNV    206  

BROMO: domain 1 of 1, from 380 to 490: score 91.0, E = 1.5e-22
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                        +  + ++e+++ ++++ ds+       ++la+p l++++kk+   
   mKIAA1420   380    AARlAQIFKEICDGIISYRDSSQ------QTLAAPLLNLPPKKK--N 418  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                    DYy+ I  P+DL+tI+k +  g+Y+++e+F aD+  +f NA +Y+++ s
   mKIAA1420   419 ADYYEKISDPLDLSTIEKQILIGYYKTVEAFDADMLKVFRNAEKYYGRKS 468  

                   evykdAkkLeklfeeklkelpp<-*
                   ++ +d  +L+k   + ++e+     
   mKIAA1420   469 PIGRDVCRLRKAYYSARHEASA    490  

PHD: domain 1 of 1, from 525 to 567: score 34.5, E = 1.5e-05
                   *->yCvCgk....g.llqCdkgCdrwyHv.Clgppleepdg.wyCprCk<
                      +C+Cg  +++g ++qCd +C +w+H +C+g   +   ++++C++C  
   mKIAA1420   525    RCICGLykdeGlMIQCD-KCMVWQHCdCMGVNTD--VEhYLCEQCD  567  

                   -*
                     
   mKIAA1420     -    -    

BAH: domain 1 of 1, from 599 to 736: score 93.9, E = 1.8e-23
                   *->etisvGDfVlvepddfknree............Kagrnvgdepyyva
                      ++++ GD+V++  d+     ++++++++ +++      +   ++ ++
   mKIAA1420   599    LLLRQGDCVYLMRDS-----RrtpdghpvrqsyRLLSHINRDKLDIF 640  

                   rIeeifetkkgkkskkvrvrwfyRPedtvlgkarllereprlkdyafdkn
                   rIe++++++k++  +++++++++RP++t++++ r            f++n
   mKIAA1420   641 RIEKLWKNEKEE--RFAFGHHYFRPHETHHSPSR-----------RFYHN 677  

                   EvflsecPceddvpledIigkCnVlklsdyeklrpeesnsdaklerakaE
                   E+f  ++  ++++ple++ g C Vl+l +y+k+rp +             
   mKIAA1420   678 ELFRVPL--YEIIPLEAVVGTCCVLDLYTYCKGRPKG------------- 712  

                   ERKkkgeedvFfcellYdptkgsFkklp<-*
                       ++e dv+ c+++ d+++  F k++   
   mKIAA1420   713 ----IKEQDVYICDYRLDKSAHLFYKIH    736  

//