hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj05028/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1420  ( 907 res)   mfj05028

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
SET         SET domain                                  197.0      3e-55   1
BAH         BAH domain                                   95.3    1.2e-24   1
Bromodomain Bromodomain                                  68.9    1.1e-16   1
PHD         PHD-finger                                   41.8    1.6e-08   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
SET           1/1      78   207 ..     1   261 []   197.0    3e-55
Bromodomain   1/1     387   476 ..     1    92 []    68.9  1.1e-16
PHD           1/1     525   569 ..     1    51 []    41.8  1.6e-08
BAH           1/1     599   736 ..     1   158 []    95.3  1.2e-24

Alignments of top-scoring domains:
SET: domain 1 of 1, from 78 to 207: score 197.0, E = 3e-55
                   *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae
                      +++++   le f+ e+kGwG+r++e++++G+fiiEY Ge+++ +e++
   mKIAA1420    78    QRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFR 124  

                   kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys
                   +r+     +++y+++ d+    Y+++ld+                     
   mKIAA1420   125 NRM-----IEQYHNHSDH----YCLNLDS--------------------- 144  

                   PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef
                                                                     
   mKIAA1420     - -------------------------------------------------- -    

                   sfedflWaasivsSRafslvegvnreeensegslelviDAtrkGNiaRFi
                                                     ++viD+ r+GN aRFi
   mKIAA1420   145 ----------------------------------GMVIDSYRMGNEARFI 160  

                   NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdprivlfAlrdIpaGe
                   NHSC+PNce+q+++v+                 g +ri+l+Al+d paG+
   mKIAA1420   161 NHSCDPNCEMQKWSVN-----------------GVYRIGLYALKDMPAGT 193  

                   ELtydYgydksnge<-*
                   ELtydY++ ++n+e   
   mKIAA1420   194 ELTYDYNFHSFNVE    207  

Bromodomain: domain 1 of 1, from 387 to 476: score 68.9, E = 1.1e-16
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      ++++ + ++ ++d++  ++l+ +   lp k++  DYYe I  P DL+
   mKIAA1420   387    FKEICDGIISYRDSSQ-QTLAAPLLNLPPKKKNADYYEKISDPLDLS 432  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TI+k +  g+Y +++e+F aD+  +f NA +Y++  s++ +d  +   
   mKIAA1420   433 TIEKQILIGYY-KTVEAFDADMLKVFRNAEKYYGRKSPIGRDVCR    476  

PHD: domain 1 of 1, from 525 to 569: score 41.8, E = 1.6e-08
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                      +C +Cg   d  +g+++qCD+C +w+H +C+g   +    +++lC++
   mKIAA1420   525    RC-ICGLYKD--EGLMIQCDKCMVWQHCDCMGVNTD---VEHYLCEQ 565  

                   Ctpk<-*
                   C+p+   
   mKIAA1420   566 CDPR    569  

BAH: domain 1 of 1, from 599 to 736: score 95.3, E = 1.2e-24
                   *->etysvGDfVlvepddpknleetKagrnvalep...............
                      + ++ GD+V++  d+                p++++ +++ +  ++ 
   mKIAA1420   599    LLLRQGDCVYLMRDS-------------RRTPdghpvrqsyrllshi 632  

                   ....yyvarIeeivelfedsdgskskmlhvrwfyRPeetPyikslgrafn
                   +++++ ++rIe++   +++++++  +++++++++RP+et  ++s++r f+
   mKIAA1420   633 nrdkLDIFRIEKL---WKNEKEE--RFAFGHHYFRPHET--HHSPSRRFY 675  

                   kDirEVflsdecddvplediigkCeVlkksdpeslqpeeinidAdkldra
                   +  +E+f ++ ++++ple++ g C Vl++ ++++++p++           
   mKIAA1420   676 H--NELFRVPLYEIIPLEAVVGTCCVLDLYTYCKGRPKG----------- 712  

                   rAERKkkgeedvFfCellYdpekgsFkklp<-*
                         ++e dv++C+++ d+++  F k+    
   mKIAA1420   713 ------IKEQDVYICDYRLDKSAHLFYKIH    736  

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