hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10268/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1417  ( 1167 res)   mpm10268

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac       111.3    1.1e-28   2
ANK      ankyrin repeats                                 26.2     0.0046   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/1       1    30 [.     1    30 []    26.2   0.0046
BTB        1/2     380   560 ..     1   114 []    58.3  9.9e-13
BTB        2/2     584   687 ..     1   114 []    55.4  7.2e-12

Alignments of top-scoring domains:
ANK: domain 1 of 1, from 1 to 30: score 26.2, E = 0.0046
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+LH  + +g++++v  Ll++g+++++   
   mKIAA1417     1    SGWTALHRSVFYGHIDCVWSLLKHGVSLYM    30   

BTB: domain 1 of 2, from 380 to 560: score 58.3, E = 9.9e-13
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      +Dvt++vg+         ++f+a  Hk++La +   S++F++lf+s+
   mKIAA1417   380    HDVTFQVGN---------RHFPA--HKYILAVR---SDFFQKLFLSd 412  

                   .....................ieldDeallievspeaFralLnflYt.kl
                   +++ + ++  +++++  + +   ++       v+p+ F+ lL+f+Yt++ 
   mKIAA1417   413 gssleltdvyqkdedaagchlFVVEK------VHPDLFEYLLQFMYTdTC 456  

                   dlpeed............................................
                   dl   + +++   +++ ++ +++++++ ++ + + ++++++  +  ++++
   mKIAA1417   457 DLLTHGfkprmivkrkaedcegspdshlhtvnchvddkqksafevyrsnq 506  

                   .......................venveelLelAdfldSYGqip.lvelC
                    ++ ++++++++++++++++ ++ + v +l   A+++    ++ +l    
   mKIAA1417   507 ahtlserqkskpksskkgkgvgdDDPVRMLQSVAKKF----GLSnLSSRL 552  

                   eefllknl<-*
                   e   l+n+   
   mKIAA1417   553 EGVRLENE    560  

BTB: domain 2 of 2, from 584 to 687: score 55.4, E = 7.2e-12
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                       Dvt    +        gk+f++  Hk+vL+a+    +yF+++++ +
   mKIAA1417   584    YDVTMKSVD--------GKEFSC--HKCVLCAR---LEYFHSMLSRs 617  

                   .........ieldDeallievspeaFralLnflYt..kldlpeed.venv
                     + ++    e++       ++ e+++ +L++lYt++ + ++e+ +v+ v
   mKIAA1417   618 wieasscaaLEMP-------IQSEILKVILDYLYTdeAVVIKESQnVDFV 660  

                   eelLelAdfldSYGqip.lvelCeefllknl<-*
                    ++L  Ad l     i++l+e Ce +l +nl   
   mKIAA1417   661 CSVLVVADQL----LITrLKEICEVALTENL    687  

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