hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10268/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1417  ( 1167 res)   mpm10268

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                  80.7    3.1e-20   2
Ank      Ankyrin repeat                                  33.7    4.1e-06   1
RCC1     Regulator of chromosome condensation (RCC1)     28.2    0.00018   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/1       1    33 [.     1    33 []    33.7  4.1e-06
RCC1       1/2      62   114 ..     1    68 []    24.1   0.0032
RCC1       2/2     118   170 ..     1    68 []     4.0      1.7
BTB        1/2     370   484 ..     1   135 []    37.4  3.2e-07
BTB        2/2     573   687 ..     1   135 []    50.8  2.9e-11

Alignments of top-scoring domains:
Ank: domain 1 of 1, from 1 to 33: score 33.7, E = 4.1e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH  +++g++++v  Ll++G +l +qd+   
   mKIAA1417     1    SGWTALHRSVFYGHIDCVWSLLKHGVSLYMQDK    33   

RCC1: domain 1 of 2, from 62 to 114: score 24.1, E = 0.0032
                   *->dGrVYslGcFRgenGqLG.lgeeveeskGGRqGLERLlvPvlvmLKs
                      dG VY++G+  +  +qLG  +++++++           vP ++    
   mKIAA1417    62    DGCVYTFGL--NMFHQLGiIPPPASCN-----------VPRQI---Q 92   

                   rssslsekVvsvasGgqHtval<-*
                    +    +    va+G  Htv+    
   mKIAA1417    93 AKYLKGRTIIGVAAGRFHTVLW    114  

RCC1: domain 2 of 2, from 118 to 170: score 4.0, E = 1.7
                   *->dGrVYslGcFRgenGqLGlg...eeveeskGGRqGLERLlvPvlvmL
                         VY+lG+   + GqLG + ++ ++++             P +v  
   mKIAA1417   118    --AVYTLGL---NGGQLGHLldpNGEKCVT----------TPRQV-- 147  

                   KsrssslsekVvsvasGgqHtval<-*
                    s     + +V+ va+ +  tv++   
   mKIAA1417   148 -SALHHKDIAVSLVAASDGATVCV    170  

BTB: domain 1 of 2, from 370 to 484: score 37.4, E = 3.2e-07
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      l e  e +++ DVt++vg+        ++f+AHK +La +S++F++l
   mKIAA1417   370    LRETDEMDSFHDVTFQVGN--------RHFPAHKYILAVRSDFFQKL 408  

                   Ftgqfkesiteeessvs.......seieledvspedfealLefiYtgels
                   F++++ + ++  + ++ +++  +      e v p+ fe lL+f+Yt++ +
   mKIAA1417   409 FLSDGSS-LELTDVYQKdedaagcHLFVVEKVHPDLFEYLLQFMYTDTCD 457  

                   itqdqksPssckseenvedlLalAad.llqipslvdkCeefliksl<-*
                   +                   L ++ +++  +++  + Ce   + +l   
   mKIAA1417   458 L-------------------LTHGFKpRMIVKRKAEDCEGSPDSHL    484  

BTB: domain 2 of 2, from 573 to 687: score 50.8, E = 2.9e-11
                   *->lnelreqg.elcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFka
                      l+ + ++ ++l DVt +  d       gk+f +HK+vL+a+ +YF++
   mKIAA1417   573    LKLSQKKCsFLYDVTMKSVD-------GKEFSCHKCVLCARLEYFHS 612  

                   lFtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqk
                   +++  +     +e ss    +e   +++e+++ +L+++Yt+e+ +     
   mKIAA1417   613 MLSRSW-----IEASSCA-ALE-MPIQSEILKVILDYLYTDEAVVI---- 651  

                   sPssckseenve...dlLalAadllqipslvdkCeefliksl<-*
                        k+ +nv+   ++L  A d l i +l+++Ce  l ++l   
   mKIAA1417   652 -----KESQNVDfvcSVLVVA-DQLLITRLKEICEVALTENL    687  

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