hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/meg/meg01478/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1411 ( 600 res) meg01478 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DUF676 Putative serine esterase (DUF676) 233.9 2.4e-66 1 PGAP1 PGAP1-like protein -85.2 0.13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF676 1/1 347 525 .. 1 249 [] 233.9 2.4e-66 PGAP1 1/1 42 567 .. 1 277 [] -85.2 0.13 Alignments of top-scoring domains: DUF676: domain 1 of 1, from 347 to 525: score 233.9, E = 2.4e-66 *->sskkdHLVVlVHGLqgNvFmFECHsaDleyiaeqlekitlaqkelpd ++++ +++ s + + +++++ ++p mKIAA1411 347 TKQP-----------SSI------SYNFSS-STSWYE------NSPK 369 eklivvlmsenNqgkTfdGidvmGeRLaeEvlefvqdksdkkakikKISF + +i +++Tf+++d+m++RL++E+++++q++s++ ++KISF mKIAA1411 370 P-QIH-------ANDTFADFDCMTDRLLDEIIQYIQIYSLT---VSKISF 408 vGHSLGGLiaRsAigylyekamqpdsddsvsksetfkgffkglepinFIT +GHSLG+Li+Rs+++++++k++++ ++++F++ mKIAA1411 409 IGHSLGNLIIRSVLTRPRFKYYLS-------------------KLHTFLS 439 LAsPHLGvlgnkpslillGlwflkklkkslsmgilgkTGrdLfLkDdndg L++PHLG+l+n+++l+++Glwf++k+kks+s+++l+++ D++d mKIAA1411 440 LSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCR-------DHSDP 482 knplLykllsdesdlkfisaCLskFKrRilYaNvvnDriVPfyTalieps ++++Lykl++++ L++FK+++l+++ +Dr+VP+++a+ie++ mKIAA1411 483 RQTFLYKLSNKAG--------LHYFKNVVLVGSL-QDRYVPYHSARIEMC 523 kl<-* k+ mKIAA1411 524 KT 525 PGAP1: domain 1 of 1, from 42 to 567: score -85.2, E = 0.13 *->elsGiPVLFIPGldfNaGSyklq..............QvRSIAaeaa +ls + +F N G ++l++ +++++++ ++Q + + + mKIAA1411 42 HLSDSKTVF------NLGTMDLPkcddtkkssiilqqQSVVFSGHL- 81 nlYfdgpletflrkaelndnaks........................... +++++ a ++ + +++++ + +++ +++ +++ mKIAA1411 82 -----------DNDTL----AMHsldlstedplrlvfldedassgvrssw 116 .................................................. +++++ + + ++++++++++++++++ ++ +++ +++ +++ ++ mKIAA1411 117 gskphldapftgpqsqgtssnnstesvptlnskliclgspcvvsgsvctd 166 .................................................. + + +++ +++++++ ++++ + + ++++ +++++ +++ ++ mKIAA1411 167 aglsadrtvegksgeplnhkqvcsaapvvesdplssstdvvkqglvenyf 216 .................................................. +++++++ ++ + +++ +++++ +++ ++ ++++++++++++++ + mKIAA1411 217 gsqsttdvsdacaitchspvssqetcdkgisdlqqeqgkeeeeedqemvq 266 .................................................. ++ +++++ + ++++ + + ++++ ++++++++++ +++ + + + + mKIAA1411 267 ngyheetdfsatdgtvsvhyisgnelgegrheqseklssnylsagvtvpa 316 .................................................. +++ + ++ ++++ + +++++ + ++++++ + + +++++ ++ mKIAA1411 317 vctsgclsfpsalrespcvkyssrskvdaitkqpssisynfssstswyen 366 ...lDfFtvDFnEeltAfhGrtLlYdQaeYlndAIryILslYkqsdassr +++ + ++D t+ +++ ++ + l++ I+yI+ +Y mKIAA1411 367 spkPQIHAND-----TFADFDCMT---DRLLDEIIQYIQ-IY-------S 400 ppptSViliGHSMGGiVARaaltlpnyipYHWidsVntIiTLsmsPHaap +++ iGHS G ++ R++lt p ++ ++++ +t ++Ls PH++ mKIAA1411 401 LTVSKISFIGHSLGNLIIRSVLTRPRFKY--YLSKLHTFLSLS-GPHLGT 447 PltfDgdilkfYalvneyWrr...................nysdgdsnns + + ++ + ++W+++++ + + +++++++++ y+++ mKIAA1411 448 L-YNSSALVNTGLWFMQKWKKsgsllqltcrdhsdprqtfLYKLS----- 491 sakds.lrlsnVllvSitGGirDLayttqvpsdytslesiriqlvpstng k + ++nV+lv+ ++D +y + ++ + ++ mKIAA1411 492 -NKAGlHYFKNVVLVGS---LQD-RYVPYHSARIEMCKT----ALKDKQS 532 ftvlttsIpdvWivggVsdlsiDHlAivW...CkQlrrvvaraLfev<-* +++++ I ++ ++++++C+ r++v +aL + mKIAA1411 533 GQIYSEMIHNLL------------RPVLQskgCNLVRYNVINALPNT 567 //