hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph00927/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1406  ( 838 res)   mph00927

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CULLIN   Cullin                                          38.4    9.2e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CULLIN     1/1     516   664 ..     1   159 []    38.4  9.2e-09

Alignments of top-scoring domains:
CULLIN: domain 1 of 1, from 516 to 664: score 38.4, E = 9.2e-09
                   *->dkvlvlFkYiedKDVFekyYkkhLAKRLllnrSaSdDaEenmitkLK
                      d + +l++ + +KD+F ++Y+ +LA RLl++ S S++ E + ++ LK
   mKIAA1406   516    DIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLK 562  

                   qecGyPaefTsKLegMFrDislSkdltqsFkdylannpgnaskksiDlsn
                    ++G      + +e+M++D+  S+ ++   ++  +  p    ++ ++++ 
   mKIAA1406   563 LRFGE--APMHFCEVMLKDMADSRRINANIREEDEKRP---VEEQPPFGV 607  

                   .vrVLtsgyWPtystekikveinLPqeLskaleeFeeFYlakhsGRkLtW
                    + +L+s++WP ++     ++   P++ ++al+++ + Y++ +  R L+W
   mKIAA1406   608 yAVILSSEFWPPFKD----EKLEVPEDIRAALDVYCKKYEKLKAMRTLSW 653  

                   lhslgsgevkanf<-*
                    h lg   v++++   
   mKIAA1406   654 KHTLG--LVTMDV    664  

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