hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03967/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1402  ( 804 res)   mbh03967

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CHGN     Chondroitin N-acetylgalactosaminyltransferas   973.8   4.2e-289   1
Fringe   Fringe-like                                    -89.2      0.098   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Fringe     1/1     131   347 ..     1   253 []   -89.2    0.098
CHGN       1/1     278   791 ..     1   683 []   973.8 4.2e-289

Alignments of top-scoring domains:
Fringe: domain 1 of 1, from 131 to 347: score -89.2, E = 0.098
                   *->evlelkDvFIAVKTTrkyHktRLeLLlqTWisrareqTFiFTDgeDk
                      e  + + + +AV T r+   t L+  ++  +  +      FT    +
   mKIAA1402   131    ELGSRERLLVAVLTSRATLST-LAVAVNRTVAHHFPRLLYFTGQ--R 174  

                   elqekagghlinTnCSavhtrqA.LcCKMavEyDkFleSgkKWFCHvDDD
                   + +  ag +++    S +  r+A L       + +    +  WF  + DD
   mKIAA1402   175 GARAPAGMQVV----SHGDERPAwLMSETLRHLHTHFGADYDWFFIMQDD 220  

                   NYVNlraLlkLLsafshsqDvYlGrPSLdhPieatervkedgtnksvkFW
                    YV  ++L  L    s +qD+YlG        +a e +   +  +  +  
   mKIAA1402   221 TYVQAPRLAALAGHLSINQDLYLG--------HAEEFIGTGEQARYCH-- 260  

                   FATGGAGFCisRgLALKMsPwASgGkFistaervRLPDDcTiGYIiEgl.
                      GG G+ +sR L L++ P   g +    ++r   PD       i  l+
   mKIAA1402   261 ---GGFGYLLSRSLLLRLRPHLDGCRGDILSAR---PDEWLGRCLIDTLg 304  

                   LgvkLlhsplFHSHLEnLqrlrteslleQVtLSYGgpenkrNVvkvkGpF
                    g   +h +         q+ r+ +l +       +pe       +   F
   mKIAA1402   305 IGCVSQHQG---------QQYRSFELAKN-----RDPEKEESPAFLSA-F 339  

                   sleeDPtR<-*
                    ++  P     
   mKIAA1402   340 AVHPVPEG    347  

CHGN: domain 1 of 1, from 278 to 791: score 973.8, E = 4.2e-289
                   *->hlekClrdmltadeDvlelGRCvrdatGvgClgthegvqyyemqsle
                      hl++C++d+l+a++D+ +lGRC++d++G+gC+++h+g+qy   +s+e
   mKIAA1402   278    HLDGCRGDILSARPDE-WLGRCLIDTLGIGCVSQHQGQQY---RSFE 320  

                   lsnseaekesyierlkspafksAltvhPvknpadmyrLHkyflrlelera
                   l+++++++++     +spaf sA++vhPv+++++myrLHk+f++lelera
   mKIAA1402   321 LAKNRDPEKE-----ESPAFLSAFAVHPVPEGTLMYRLHKRFSALELERA 365  

                   reeiiqLeaeisrlaeysasegirkisWplgiPpSFmpstPnnRyevltW
                   ++ei+qL+a+i++l +++++eg++++sWp+g+P+   p+tP++R+evl+W
   mKIAA1402   366 YSEIEQLQAQIRNL-TVLTPEGEAGLSWPVGLPA---PFTPHSRFEVLGW 411  

                   eyfTgthlfscaDgLakePretldgaeRaDlaDvveqaLeelNrnasprl
                   +yfT++h+f+caDg   +P+++l+ga+RaD++D+v++aLe+lNr+++prl
   mKIAA1402   412 DYFTEQHTFACADG---APKCPLQGASRADVGDAVDTALEQLNRRYQPRL 458  

                   RvKGAGSAAAYASDViKLqfqsLqnGYRRfdPtrGmdYtLDLlLRKTVNE
                   R                +++q+L+nGYRRfdP+rGm+YtLDLlL      
   mKIAA1402   459 R----------------FRKQRLLNGYRRFDPARGMEYTLDLLL------ 486  

                   mPEVDNRFESdleaahpegkrrilvrRrayVlrplsrvqivEHEELDAqp
                               ea++++g+rr+l+ Rr+++lrplsrv+i+        p
   mKIAA1402   487 ------------EAVTQRGHRRSLA-RRVSLLRPLSRVEIL--------P 515  

                   spyvteatasGaLSFLSNSLKKLVPFqLPGSKsehkePKDKrihvllPLA
                   +pyvteat                                 r++++lPL 
   mKIAA1402   516 MPYVTEAT---------------------------------RVQLVLPL- 531  

                   legrvdsalrFleafaklCLFepneDravlLlvllYgleeerkvreDpFk
                   l++++++al+Fleafa+++L ep+e +a+l+l+l+Yg++e+r+++ DpF+
   mKIAA1402   532 LVAEAPAALAFLEAFAASVL-EPRE-HALLTLLLVYGPREGRGGP-DPFL 578  

                   avKaeaaELerDYRykslpgariawlsVsPALseefsrpvDPqSWLLHAS
                   +vKa+aaELer  Ry+   gar+awl+V+      +++p+          
   mKIAA1402   579 GVKAAAAELER--RYP---GARLAWLAVR------AEAPS---------- 607  

                   mYGPRqLLaLrlgdealpkhgldtLlfLadVdmvfttdFLnRcRmNTIlG
                           ++rl+d++++kh++dtL+fL++V++++++++LnRcRmN+I+G
   mKIAA1402   608 --------QVRLMDVISKKHPVDTLFFLTTVWTRPGSEVLNRCRMNAISG 649  

                   wQvYFPvvFseYnPaivymEmTEKEEketPteqareaALSelqsgvdPse
                   wQ++FPv+F+e+nPa+++        +++P+++++++   ++++gvdPs+
   mKIAA1402   650 WQAFFPVHFQEFNPALSP--------QRSPPGVPGAD---PPSPGVDPSR 688  

                   gdtlvvsrdtGrFdrqgygetcfYksDyvaARarLaqqeVgGfdEeeIeG
                   g++++     GrFdrq+++e+cfY++Dy+aARarLa+++ +G++    e+
   mKIAA1402   689 GAPVG-----GRFDRQASAEGCFYNADYLAARARLAGEL-AGQE----EE 728  

                   WGlEdvDLfekflrfGEETRPPGVESiLDmFVAAqsslhvlRavEPgLvF
                   ++lE+++++ +flrf                    s+lh++RavEPgLv 
   mKIAA1402   729 EALEGLEVMDVFLRF--------------------SGLHLFRAVEPGLV- 757  

                   GhryhprlCdpnsLdteqyhrClrSkaenlASrdQL<-*
                    ++++ r+C+p+ L++e+yhrC+ S++e+l++r+QL   
   mKIAA1402   758 -QKFSLRDCSPR-LSEELYHRCRLSNLEGLGARTQL    791  

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