hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02450/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1401  ( 800 res)   mph02450

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF663   Protein of unknown function (DUF663)           615.3   3.6e-181   1
AARP2CN  AARP2CN (NUC121) domain                        145.3    1.1e-39   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AARP2CN    1/1     225   306 ..     1    88 []   145.3  1.1e-39
DUF663     1/1     482   769 ..     1   326 []   615.3 3.6e-181

Alignments of top-scoring domains:
AARP2CN: domain 1 of 1, from 225 to 306: score 145.3, E = 1.1e-39
                   *->EilNLlRfisvmKpRpltWRdsRpYlLaDrvedvtspeeieespkvg
                      E+ +LlR+++++K+R+l +Rd+R+Yl+a+ +++v+s    ees++vg
   mKIAA1401   225    ESGMLLRQLANQKQRHLAFRDRRAYLFAHVADFVPS----EESDLVG 267  

                   rlvavyKGyVRGtgLnvnrlVHIpGvGDFqiskiealpDPc<-*
                   +l+ ++ GyVRG+ Lnvn+l HI+G+GDFq+++i+a++DP+   
   mKIAA1401   268 TLK-IS-GYVRGRTLNVNSLLHIVGHGDFQMNQIDAPVDPF    306  

DUF663: domain 1 of 1, from 482 to 769: score 615.3, E = 3.6e-181
                   *->DEvelppdvparerfaKYrGLkSfrtSpWDpnElkDpnlPndyarif
                      DE ++p+dv+ar+rf+KYrGLkSfrtSpWDp+E    nlP+dyarif
   mKIAA1401   482    DEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKE----NLPRDYARIF 524  

                   qfqNykntKkrilnekyiFREtekldveeekriegvkpGsyVrleiknVP
                   qfqN+ nt+kri++e+            eek++eg+++G+yV+l++++VP
   mKIAA1401   525 QFQNFVNTRKRIFKEI------------EEKEAEGAEVGWYVTLHVSDVP 562  

                   kelaenfnsvnpkqmpiFivfgLLphEeKmsvvnfkikkhrwykkplkSk
                   ++++e+f++   +  p+ i+f+LLp+E+Kmsv+n+++ + +++++p+k+k
   mKIAA1401   563 VSVVEYFRQ---GA-PL-IAFSLLPYEQKMSVLNMVVSRNPGNTEPVKAK 607  

                   epLiiqvGfRRFqanPiySqPgsntsndkhKyeRYlpphktcvATfYGPi
                   e+Li+++GfRRF+a+P++Sq   +t++dkhK++R+l+++ ++v T+ +Pi
   mKIAA1401   608 EELIFHCGFRRFRASPLFSQ---HTAADKHKFQRFLTADAAFVVTVFAPI 654  

                   tfpnspvlafkkvkssdsEnfrqngfrlaAtGsilevdpnriIlKklvLt
                   tfp+++vl+fk+  ++++       ++l+AtG++ +vdp+r+++K++vL+
   mKIAA1401   655 TFPPASVLLFKQ-RRNGM-------HSLIATGHLFSVDPDRMVIKRVVLS 696  

                   GhPyKIfKktafvRyMFfnreDVewFkCCvqpvplfTksGrrGhIKeals
                   GhP+KIf+k+a+vRyMFfnreDV wFk    pv+l+Tk+GrrGhIKe+l 
   mKIAA1401   697 GHPFKIFTKMAVVRYMFFNREDVMWFK----PVELRTKWGRRGHIKEPL- 741  

                   gthFGyfKAtFdgkinmqDiVimsLYkRV<-*
                   gth G++K++Fdgk+++qD+V+m+LYkRV   
   mKIAA1401   742 GTH-GHMKCSFDGKLKSQDTVLMNLYKRV    769  

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