hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01141/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1400  ( 1098 res)   mbh01141

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                              436.2   1.7e-126   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/6      92   178 ..     1   121 []    20.1    0.026
CA         2/6     202   306 ..     1   121 []    56.5  3.5e-12
CA         3/6     330   414 ..     1   121 []    98.8  6.2e-25
CA         4/6     438   519 ..     1   121 []    99.4  4.2e-25
CA         5/6     543   630 ..     1   121 []   102.8  3.9e-26
CA         6/6     661   744 ..     1   121 []    70.8  1.8e-16

Alignments of top-scoring domains:
CA: domain 1 of 6, from 92 to 178: score 20.1, E = 0.026
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.............lFsId
                      v  + +D g             +  + ls ++ ++  ++++++ +++
   mKIAA1400    92    VGNIAEDLG-------------LDITKLSarrfqtvansrtpYLDLN 125  

                   petGtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgG
                    etG           ++++++ +DRE+++++      ++  L  e+   +
   mKIAA1400   126 LETG-----------VLYVNEKIDREQICKQS-----PSCVLHLEVFLEN 159  

                   gpppgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                           v ++VlD+NDN+P   
   mKIAA1400   160 ------------------PLELFRVEIEVLDINDNPP    178  

CA: domain 2 of 6, from 202 to 306: score 56.5, E = 3.5e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                       sA D+D g   +N+         Y+i+++++Fs+d +t   g    
   mKIAA1400   202    ESAFDPDVG---TNSL------RDYEITPnsYFSLDVQTQGDGNR-- 237  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp.t
                     + ++++ kpLDRE+q         ++++ + +A+DgGg  +g+++ + 
   mKIAA1400   238 --FAELVLEKPLDREQQ---------AVHRYVLTAVDGGGGGGGGEGGgG 276  

                   .......rksqqtpplsstatvtvtVlDvNDNaP<-*
                   +++ + ++    ++++++ta +t++VlD NDN P   
   mKIAA1400   277 gggaglpP----QQQRTGTALLTIRVLDSNDNVP    306  

CA: domain 3 of 6, from 330 to 414: score 98.8, E = 6.2e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      ++AtD+D+g   +Ng+      v+Ys++s+ +++ ++lF + p+tG 
   mKIAA1400   330    LNATDPDEG---QNGE------VVYSFSShisprareLFGLSPRTG- 366  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                              + ++++LD+Ee          ++Y++ v+A+D G++   
   mKIAA1400   367 ----------RLEVSGELDYEES---------PVYQVYVQAKDLGPNA-- 395  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  +++ v v+VlD NDNaP   
   mKIAA1400   396 -------------VPAHCKVLVRVLDANDNAP    414  

CA: domain 4 of 6, from 438 to 519: score 99.4, E = 4.2e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +s+tD+Ds+   eNg+      v +++l++ +F++ ++  +      
   mKIAA1400   438    FSVTDRDSE---ENGQ------VQCELLGdvPFRLKSSFKN------ 469  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     +++i+t +pLDRE++         ++YtLtv+A+D+G+p         
   mKIAA1400   470 --YYTIVTEAPLDREAG---------DSYTLTVVARDRGEPA-------- 500  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          ls++ +++v+V DvNDNaP   
   mKIAA1400   501 -------LSTSKSIQVQVSDVNDNAP    519  

CA: domain 5 of 6, from 543 to 630: score 102.8, E = 3.9e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      vsAtD+D+g    N+k      +tYsil+ + ++ +  ++ sI++++
   mKIAA1400   543    VSATDRDEG---ANAK------LTYSILEcqiqgmsvftYVSINSDN 580  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            +++++++D+E++         + ++++veA+D+G+p+
   mKIAA1400   581 G-----------YLYALRSFDYEQI---------KDFSFQVEARDAGSPQ 610  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                   +              l ++atv++ ++D+NDNaP   
   mKIAA1400   611 A--------------LAGNATVNILIVDQNDNAP    630  

CA: domain 6 of 6, from 661 to 744: score 70.8, E = 1.8e-16
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v A+DaD+g   eN++      +tYsi+++++ +lF++d +tG    
   mKIAA1400   661    VAAVDADDG---ENAR------LTYSIVRgnemnLFRLDWRTG---- 694  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                        e+ +  + p  R+ q           Y+L++e++D+G+pp     
   mKIAA1400   695 -----ELRTARRVPAKRDPQ---------RPYELVIEVRDHGQPP----- 725  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             lsstat++v+++D    +    
   mKIAA1400   726 ----------LSSTATLVVQLVDGAVEPQ    744  

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