hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01141/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1400  ( 1098 res)   mbh01141

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
Cadherin   Cadherin domain                              301.4    1.1e-86   5
Cadherin_2 Cadherin-like                                182.7    5.8e-51   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Cadherin_2   1/1      76   159 ..     1    84 []   182.7  5.8e-51
Cadherin     1/5     185   299 ..     1   107 []    20.4    0.022
Cadherin     2/5     313   407 ..     1   107 []    93.6    4e-24
Cadherin     3/5     421   512 ..     1   107 []    58.9  1.1e-13
Cadherin     4/5     526   623 ..     1   107 []    66.7  4.8e-16
Cadherin     5/5     645   737 ..     1   107 []    76.3  6.5e-19

Alignments of top-scoring domains:
Cadherin_2: domain 1 of 1, from 76 to 159: score 182.7, E = 5.8e-51
                   *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF
                       q++Y+V+EE e+G+fVGN+A DLGLd+++L+aR+++ v++++++y+
   mKIAA1400    76    SQLHYTVQEEQEHGTFVGNIAEDLGLDITKLSARRFQTVANSRTPYL 122  

                   qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-*
                   +lnletG+L+vnE+iDRE++C+qs++CvLhlev+lEn   
   mKIAA1400   123 DLNLETGVLYVNEKIDREQICKQSPSCVLHLEVFLEN    159  

Cadherin: domain 1 of 5, from 185 to 299: score 20.4, E = 0.022
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                       +++++E a +Gt+     A D+D   g+N+   Y i++++    F+
   mKIAA1400   185    LTVEISESATPGTRFPLESAFDPD--VGTNSLRDYEITPNS---YFS 226  

                   IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgg..
                   +d +t  +     ++ + kpLDRE++    ++ ++ A+D++     gg++
   mKIAA1400   227 LDVQTQGDGNRfaeLVLEKPLDREQQ--AVHRYVLTAVDGG-----GGgg 269  

                   ...............gpplsstatvtitVl<-*
                   ++++++++++ + ++++ +++ta +ti Vl   
   mKIAA1400   270 ggegggggggaglppQQQRTGTALLTIRVL    299  

Cadherin: domain 2 of 5, from 313 to 407: score 93.6, E = 4e-24
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg
                      y++s+pEn+p+Gt v++++AtD+D  +g+Ng ++Ys++++ +++ + 
   mKIAA1400   313    YTVSLPENSPPGTLVIQLNATDPD--EGQNGEVVYSFSSHISpraRE 357  

                   wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp
                    F + p+tG+    + +  +LD+Ee   + Y ++v A+D        g+ 
   mKIAA1400   358 LFGLSPRTGR----LEVSGELDYEES--PVYQVYVQAKDL-------GPN 394  

                   plsstatvtitVl<-*
                   +  + + v + Vl   
   mKIAA1400   395 AVPAHCKVLVRVL    407  

Cadherin: domain 3 of 5, from 421 to 512: score 58.9, E = 1.1e-13
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                          v+E+a++Gt v+ + +tD+D  +  Ng++   +lg+ p   Fr
   mKIAA1400   421    VKEAVSEGAAPGTVVALFSVTDRD--SEENGQVQCELLGDVP---FR 462  

                   IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
                   + + +  n  +i t +pLDRE+   + Y+Ltv+A+D+       g+p+ls
   mKIAA1400   463 LKS-SFKNYYTIVTEAPLDREAG--DSYTLTVVARDR-------GEPALS 502  

                   statvtitVl<-*
                   +  ++ ++V    
   mKIAA1400   503 TSKSIQVQVS    512  

Cadherin: domain 4 of 5, from 526 to 623: score 66.7, E = 4.8e-16
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.....
                      y + v En ++G  +  v AtD+D  +g+N++++Ysil+   ++ + 
   mKIAA1400   526    YDVYVTENNVPGAYIYAVSATDRD--EGANAKLTYSILECQIqgmsv 570  

                   ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg
                       +I++d+G     ++  ++ D+E+i    +++ veA+Da      g 
   mKIAA1400   571 FTYVSINSDNGY----LYALRSFDYEQI--KDFSFQVEARDA------GS 608  

                   gpplsstatvtitVl<-*
                   +++l + atv+i +    
   mKIAA1400   609 PQALAGNATVNILIV    623  

Cadherin: domain 5 of 5, from 645 to 737: score 76.3, E = 6.5e-19
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                      +++  +  +p G  +++v+A+DaD   g N+r++Ysi++gn+ + Fr
   mKIAA1400   645    REVLPRSAEP-GYLLTRVAAVDAD--DGENARLTYSIVRGNEMNLFR 688  

                   IdpdtGdnegiisttkpL..DREeifngeYeLtveAtDadpllasgggpp
                   +d +tG+    ++t+++++  R  +  + YeL++e++D+       g+pp
   mKIAA1400   689 LDWRTGE----LRTARRVpaKRDPQ--RPYELVIEVRDH-------GQPP 725  

                   lsstatvtitVl<-*
                   lsstat+++++    
   mKIAA1400   726 LSSTATLVVQLV    737  

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