hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00671/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1399  ( 471 res)   mbg00671

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           62.0    1.2e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1     225   270 ..     1    50 []    62.0  1.2e-14

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 225 to 270: score 62.0, E = 1.2e-14
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      CrIC++++++ +    l++pC++ Gs+k+ +++Cl +w+s++g+++C
   mKIAA1399   225    CRICFQGPEQGE----LLSPCRCDGSVKCTHQPCLIKWISERGCWSC 267  

                   plC<-*
                   +lC   
   mKIAA1399   268 ELC    270  

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