hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12832/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1397  ( 736 res)   mbg12832

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    26.8      0.003   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/2     116   155 ..     1    46 []    19.3     0.43
WD40       2/2     204   240 ..     1    46 []     7.5       32

Alignments of top-scoring domains:
WD40: domain 1 of 2, from 116 to 155: score 19.3, E = 0.43
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++  + l+gH++  +V  v+++         + la+++ Dg i +W
   mKIAA1397   116    PqRINFNLRGHNS--EVVLVRWNEPY------QKLATCDaDGGIFVW 154  

                   d<-*
                       
   mKIAA1397   155 I    155  

WD40: domain 2 of 2, from 204 to 240: score 7.5, E = 32
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++    l+   +   +t+  + pd+      ++++ g  Dg++ + 
   mKIAA1397   204    HwSSEINLE---S--QITCGIWTPDD------QQVLFGTaDGQVIVM 239  

                   d<-*
                   d   
   mKIAA1397   240 D    240  

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