hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12832/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1397  ( 736 res)   mbg12832

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SOCS_box SOCS box                                        41.6    1.8e-08   1
WD40     WD domain, G-beta repeat                        20.8      0.033   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/1     118   155 ..     1    38 []    20.8    0.033
SOCS_box   1/1     419   456 ..     1    42 []    41.6  1.8e-08

Alignments of top-scoring domains:
WD40: domain 1 of 1, from 118 to 155: score 20.8, E = 0.033
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                           l+gH+s V  v+++ + ++ la++ +Dg i +W    
   mKIAA1397   118    RINFNLrGHNSEVVLVRWNEP-YQKLATCDADGGIFVWI    155  

SOCS_box: domain 1 of 1, from 419 to 456: score 41.6, E = 1.8e-08
                   *->prSLqhLCRlaIRrslgrdrlhlaikqLPLPprLkdYLleye<-*
                      ++SLq LC  aI ++l++d +   +++L LPprL++YL+      
   mKIAA1397   419    VSSLQLLCQQAIASTLREDKD---VNKLTLPPRLCSYLS-TA    456  

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