hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj16154/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1396  ( 481 res)   mfj16154

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    215.9    3.6e-60  11
KRAB     krueppel associated box                         93.5    2.5e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      15    75 ..     1    62 []    93.5  2.5e-23
ZnF_C2H2   1/11    174   196 ..     1    23 []    25.5   0.0076
ZnF_C2H2   2/11    202   224 ..     1    23 []    22.7    0.051
ZnF_C2H2   3/11    230   252 ..     1    23 []    25.3   0.0083
ZnF_C2H2   4/11    258   280 ..     1    23 []    25.2   0.0089
ZnF_C2H2   5/11    286   308 ..     1    23 []    28.6  0.00087
ZnF_C2H2   6/11    314   336 ..     1    23 []    26.4   0.0039
ZnF_C2H2   7/11    342   364 ..     1    23 []    28.1   0.0012
ZnF_C2H2   8/11    370   392 ..     1    23 []    26.8    0.003
ZnF_C2H2   9/11    398   420 ..     1    23 []    30.5  0.00023
ZnF_C2H2  10/11    426   448 ..     1    23 []    20.9     0.18
ZnF_C2H2  11/11    454   476 ..     1    23 []    24.5    0.014

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 15 to 75: score 93.5, E = 2.5e-23
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtF DVA+dFs+EEW +L paQr LYR V+lENY+nLvS+Gg +v+k
   mKIAA1396    15    VTFNDVAIDFSPEEWDWLNPAQRSLYRTVVLENYRNLVSVGGKSVQK 61   

                   pdliskLEqgeEpwi<-*
                     ++s+  q  +  +   
   mKIAA1396    62 THELSLR-QLVFEDV    75   

ZnF_C2H2: domain 1 of 11, from 174 to 196: score 25.5, E = 0.0076
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C k+f++ +a + H+r+H   
   mKIAA1396   174    FKCNE-CEKTFTHSsAVTVHQRIH    196  

ZnF_C2H2: domain 2 of 11, from 202 to 224: score 22.7, E = 0.051
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++ ++L +H  +H   
   mKIAA1396   202    YQCTV-CGKAFKQShHLAQHHTTH    224  

ZnF_C2H2: domain 3 of 11, from 230 to 252: score 25.3, E = 0.0083
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C+k fs+ + L+ H r+H   
   mKIAA1396   230    FQCEE-CKKAFSQNsYLTVHRRIH    252  

ZnF_C2H2: domain 4 of 11, from 258 to 280: score 25.2, E = 0.0089
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C ksf+++ +L +H r+H   
   mKIAA1396   258    YKCKE-CAKSFRQPaHLAQHHRIH    280  

ZnF_C2H2: domain 5 of 11, from 286 to 308: score 28.6, E = 0.00087
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+i Cgk f++  +L+ H+rvH   
   mKIAA1396   286    YKCEI-CGKAFNHSmSLTGHQRVH    308  

ZnF_C2H2: domain 6 of 11, from 314 to 336: score 26.4, E = 0.0039
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  Cgk f++  +L+ H r+H   
   mKIAA1396   314    YKCKD-CGKAFRQSiHLVVHSRIH    336  

ZnF_C2H2: domain 7 of 11, from 342 to 364: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f+  ++L+ H+r H   
   mKIAA1396   342    YECNE-CGKTFRESsQLTIHQRNH    364  

ZnF_C2H2: domain 8 of 11, from 370 to 392: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk f++   L rH+++H   
   mKIAA1396   370    FECKQ-CGKFFNRSaYLARHQKIH    392  

ZnF_C2H2: domain 9 of 11, from 398 to 420: score 30.5, E = 0.00023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f+++  L+rH rvH   
   mKIAA1396   398    YECNE-CGKTFTHAaYLIRHKRVH    420  

	[output cut off at A = 10 top alignments]
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