hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj16154/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1396  ( 481 res)   mfj16154

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         289.4    4.6e-83  11
KRAB     KRAB box                                        92.6    7.7e-24   1
PHD      PHD-finger                                      -5.6       0.99   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      15    55 ..     1    41 []    92.6  7.7e-24
zf-C2H2    1/11    174   196 ..     1    24 []    32.2  1.2e-05
zf-C2H2    2/11    202   224 ..     1    24 []    29.1  0.00011
zf-C2H2    3/11    230   252 ..     1    24 []    34.8  1.9e-06
PHD        1/1     203   266 ..     1    51 []    -5.6     0.99
zf-C2H2    4/11    258   280 ..     1    24 []    30.3  4.5e-05
zf-C2H2    5/11    286   308 ..     1    24 []    35.1  1.6e-06
zf-C2H2    6/11    314   336 ..     1    24 []    32.8  7.9e-06
zf-C2H2    7/11    342   364 ..     1    24 []    36.4  6.6e-07
zf-C2H2    8/11    370   392 ..     1    24 []    34.6  2.2e-06
zf-C2H2    9/11    398   420 ..     1    24 []    36.2  7.7e-07
zf-C2H2   10/11    426   448 ..     1    24 []    25.3   0.0014
zf-C2H2   11/11    454   476 ..     1    24 []    33.4  5.3e-06

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 15 to 55: score 92.6, E = 7.7e-24
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                      VtF DVA+dF+ EEW +L+paQr+LYr V+lENyrnLvS+g   
   mKIAA1396    15    VTFNDVAIDFSPEEWDWLNPAQRSLYRTVVLENYRNLVSVG    55   

zf-C2H2: domain 1 of 11, from 174 to 196: score 32.2, E = 1.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C k+F+++s  + H+r+H   
   mKIAA1396   174    FKCN-ECEKTFTHSSAVTVHQRIH    196  

zf-C2H2: domain 2 of 11, from 202 to 224: score 29.1, E = 0.00011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+++++L +H  tH   
   mKIAA1396   202    YQCT-VCGKAFKQSHHLAQHHTTH    224  

zf-C2H2: domain 3 of 11, from 230 to 252: score 34.8, E = 1.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C+k+Fs++s L+ H+r+H   
   mKIAA1396   230    FQCE-ECKKAFSQNSYLTVHRRIH    252  

PHD: domain 1 of 1, from 203 to 266: score -5.6, E = 0.99
                   *->yCsvCgkpddd...........aggdllqCDgCdrwfHlaClgpple
                       C vCgk +  +++  ++++++  ++l qC++C+++f +  +    +
   mKIAA1396   203    QCTVCGKAFKQshhlaqhhtthTHEKLFQCEECKKAFSQNSYLTVHR 249  

                   ..eppegkWlCpeCtpk<-*
                   +    e  + C+eC  +   
   mKIAA1396   250 riHTGEKPYKCKECAKS    266  

zf-C2H2: domain 4 of 11, from 258 to 280: score 30.3, E = 4.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C ksF+++++L +H r+H   
   mKIAA1396   258    YKCK-ECAKSFRQPAHLAQHHRIH    280  

zf-C2H2: domain 5 of 11, from 286 to 308: score 35.1, E = 1.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F+++ +L+ H+r+H   
   mKIAA1396   286    YKCE-ICGKAFNHSMSLTGHQRVH    308  

zf-C2H2: domain 6 of 11, from 314 to 336: score 32.8, E = 7.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ dCgk+F+++ +L  H r+H   
   mKIAA1396   314    YKCK-DCGKAFRQSIHLVVHSRIH    336  

zf-C2H2: domain 7 of 11, from 342 to 364: score 36.4, E = 6.6e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+ +s+L+ H+r H   
   mKIAA1396   342    YECN-ECGKTFRESSQLTIHQRNH    364  

zf-C2H2: domain 8 of 11, from 370 to 392: score 34.6, E = 2.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk F+r++ L rH+++H   
   mKIAA1396   370    FECK-QCGKFFNRSAYLARHQKIH    392  

zf-C2H2: domain 9 of 11, from 398 to 420: score 36.2, E = 7.7e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F++ + L rH+r+H   
   mKIAA1396   398    YECN-ECGKTFTHAAYLIRHKRVH    420  

zf-C2H2: domain 10 of 11, from 426 to 448: score 25.3, E = 0.0014
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC  +Cgk+F + s+  +H+r H   
   mKIAA1396   426    YKCA-ECGKAFGDGSSRAQHQRLH    448  

zf-C2H2: domain 11 of 11, from 454 to 476: score 33.4, E = 5.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg++F+rks+L+ H+r H   
   mKIAA1396   454    YVCE-KCGRAFRRKSSLNCHQRYH    476  

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