hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg19945/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1391  ( 1063 res)   mbg19945

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   153.5    2.2e-41   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1     255   429 ..     1   193 []   153.5  2.2e-41

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 255 to 429: score 153.5, E = 2.2e-41
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      +++P+ +  + ++l + G  t+GI+R s++ + ++eL+e+++sg + 
   mKIAA1391   255    DNLPKPILDMLSFLNQKGPLTKGIFRQSANMKSCRELKEKLNSGIEv 301  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                                  l+ +++ ++A++LK +LR+ Pe+++ ++ly+ ++ 
   mKIAA1391   302 H--------------LDCESIFVIASVLKDFLRNIPESIFSSDLYDHWVC 337  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   ++                 ++ee++  +++ll +LP+an   LryL++ L
   mKIAA1391   338 VMDQ--------------GNDEEKINIIQRLLDQLPRANVVFLRYLFgVL 373  

                   nrVaehsevNkMtarNLAivFgPtLlrpp........ltdikhqnkvvet
                   +++ +hs +N Mta NLA++++P++l+pp +++++ +   +k+++ ++++
   mKIAA1391   374 HNIEQHSLSNQMTAFNLAVCIAPSILWPPassspeleNEFTKKVSLLIQF 423  

                   lienad<-*
                   lien+    
   mKIAA1391   424 LIENCC    429  

//