hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg19945/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1391  ( 1063 res)   mbg19945

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  196.9    3.2e-55   1
RA       Ras association (RalGDS/AF-6) domain            68.8    1.1e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RA         1/1      75   164 ..     1    98 []    68.8  1.1e-16
RhoGAP     1/1     258   408 ..     1   155 []   196.9  3.2e-55

Alignments of top-scoring domains:
RA: domain 1 of 1, from 75 to 164: score 68.8, E = 1.1e-16
                   *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp
                      +s  l+++  d+ ++  +kti v +++Ta+eVi++ L+++g+ + + 
   mKIAA1391    75    KSIPLKIFAKDIGNCAyFKTITVMNSDTASEVINMSLQMLGI-TGSE 120  

                   edyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqvrsrFlLrrr
                   +dy+L++     ++++  + +L  +E+P+ i + + r    ++ +l ++ 
   mKIAA1391   121 RDYQLWV---NSGKEAAPY-PLIGHEYPYGIKMSHLR----DTALLTQGS 162  

                   ed<-*
                   +d   
   mKIAA1391   163 RD    164  

RhoGAP: domain 1 of 1, from 258 to 408: score 196.9, E = 3.2e-55
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+++ ++++fl ++G+ t+GI+R+s++ + ++eL+e++++g +v   
   mKIAA1391   258    PKPILDMLSFLNQKGPLTKGIFRQSANMKSCRELKEKLNSGIEV--- 301  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   +l++e++ v+As+LK+FLR++Pe++++ +ly+++++ +++  ++ee+++ 
   mKIAA1391   302 HLDCESIFVIASVLKDFLRNIPESIFSSDLYDHWVC-VMDQGNDEEKINI 350  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +++ll++LP+aN   LryL++ L+++ q+s  N+Mta NLA++++P++l+
   mKIAA1391   351 IQRLLDQLPRANVVFLRYLFGVLHNIEQHSLSNQMTAFNLAVCIAPSILW 400  

                   ppdgdsad<-*
                   pp++ s++   
   mKIAA1391   401 PPASSSPE    408  

//