hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpj/mpj01642/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1390 ( 378 res) mpj01642 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DUF544 Protein of unknown function (DUF544) 275.9 5.2e-79 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF544 1/1 53 178 .. 1 150 [] 275.9 5.2e-79 Alignments of top-scoring domains: DUF544: domain 1 of 1, from 53 to 178: score 275.9, E = 5.2e-79 *->aNvLiLkpkvtRyaeEliRLppkkevvTseeLvelLvDvlLqvkpkE +N+L+L++kv+ Lpp+kev+Ts+eL+ +L+++lL++kp+E mKIAA1390 53 MNILFLQWKVK--------LPPQKEVITSDELLTHLGNCLLSIKPQE 91 kdEglkenfeqNiqdlldlLpkLhtGLdVNvkFnRkYLivmtGnvLLaCg k+Egl++nf+qN++d++++LpkL+tGLdVNv+F+ g mKIAA1390 92 KSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT---------------G 126 iddFEyTpElsIFdLlnvpLYHGWlvDpqideNiveaigklSYnelvekl ++dFEyTpE+sIFdLl++pLYHGWlvDpq++e +v a+gklSYn+lvek+ mKIAA1390 127 VSDFEYTPECSIFDLLGIPLYHGWLVDPQSPE-AVSAVGKLSYNQLVEKI 175 vql<-* +++ mKIAA1390 176 ITC 178 //