hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01631/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1389  ( 1185 res)   mbh01631

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      44.3    1.6e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1     423   489 ..     1    80 []    44.3  1.6e-08

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 423 to 489: score 44.3, E = 1.6e-08
                   *->gglGfsivggifvssvvpGspAakaGrkslglLkvGDvIleVNGets
                      g+lGf +    +v++v+p + A+kaG      L+ G +++e+   + 
   mKIAA1389   423    GQLGFHVNFEGIVADVEPFGFAWKAG------LRQGSRLVEICK-VA 462  

                   vegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   v +lthe+ +dll+ +       +v+++++ +    
   mKIAA1389   463 VATLTHEQMIDLLRTSV------TVKVVIIQPH    489  

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