hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01631/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1389  ( 1185 res)   mbh01631

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Rap_GAP  Rap/ran-GAP                                    432.7   3.3e-126   1
PDZ      PDZ domain (Also known as DHR or GLGF)          35.5    1.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Rap_GAP    1/1      88   276 ..     1   192 []   432.7 3.3e-126
PDZ        1/1     414   486 ..     1    82 []    35.5  1.2e-06

Alignments of top-scoring domains:
Rap_GAP: domain 1 of 1, from 88 to 276: score 432.7, E = 3.3e-126
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      +y+Ne a+paF+eFL+lLGqrvrLK+f +   Yr++LD k+d+TGth
   mKIAA1389    88    MYNNETAGPAFEEFLDLLGQRVRLKGFSK---YRAQLDNKTDSTGTH 131  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   s+Yttykd e mFHVSTlLPy ++++qqL+rKRHIGNDiVtIVFqe+G++
   mKIAA1389   132 SLYTTYKDFELMFHVSTLLPYMPNNRQQLLRKRHIGNDIVTIVFQEPGAL 181  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pF p++IrShFqhVfviV++++p+te+v+Y+V v+r+kDvp fgp++pkg
   mKIAA1389   182 PFTPKNIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKG 231  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   ++f+k+a+Fr+flLak+iNaena+hk++kF+++atrtRq++L+dL   
   mKIAA1389   232 VTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDL    276  

PDZ: domain 1 of 1, from 414 to 486: score 35.5, E = 1.2e-06
                   *->evtlekevkrgglGfsikggsdkgivvsevlpGsgaAeagGrLkeGD
                      e+tl ++ + g lGf +      + +v++v p+ g A ++G L+ G 
   mKIAA1389   414    EMTLRRN-GLGQLGFHVNF----EGIVADVEPF-GFAWKAG-LRQGS 453  

                   qIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   ++++++ + v+ l+he+ +++l+ s+  +v+++i+   
   mKIAA1389   454 RLVEICKVAVATLTHEQMIDLLRTSV--TVKVVII    486  

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