hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09616/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1388  ( 523 res)   mbg09616

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    209.1    4.1e-58  14

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/14     45    65 ..     1    23 []     4.0  1.1e+02
ZnF_C2H2   2/14     73    95 ..     1    23 []    17.4        2
ZnF_C2H2   3/14    143   165 ..     1    23 []    27.3   0.0021
ZnF_C2H2   4/14    171   193 ..     1    23 []    26.6   0.0034
ZnF_C2H2   5/14    199   221 ..     1    23 []    27.0   0.0025
ZnF_C2H2   6/14    256   278 ..     1    23 []    27.8   0.0015
ZnF_C2H2   7/14    284   306 ..     1    23 []    27.0   0.0027
ZnF_C2H2   8/14    312   334 ..     1    23 []    20.7      0.2
ZnF_C2H2   9/14    340   360 ..     1    23 []     8.0       40
ZnF_C2H2  10/14    369   391 ..     1    23 []    29.7   0.0004
ZnF_C2H2  11/14    399   419 ..     1    23 []     2.0  1.9e+02
ZnF_C2H2  12/14    427   449 ..     1    23 []    29.1  0.00061
ZnF_C2H2  13/14    455   477 ..     1    23 []    27.8   0.0015
ZnF_C2H2  14/14    483   505 ..     1    23 []    21.9    0.092

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 14, from 45 to 65: score 4.0, E = 1.1e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C k f+++++L +H+      
   mKIAA1388    45    FQCTQ-CLKIFHQAtDLLEHQC--    65   

ZnF_C2H2: domain 2 of 14, from 73 to 95: score 17.4, E = 2
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + C++ fs  ++L +H  +H   
   mKIAA1388    73    FVCGV-CKMGFSLLtSLAQHHSSH    95   

ZnF_C2H2: domain 3 of 14, from 143 to 165: score 27.3, E = 0.0021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y Cp+ C+k f++ ++L rH r+H   
   mKIAA1388   143    YSCPV-CQKPFKHLsELSRHERIH    165  

ZnF_C2H2: domain 4 of 14, from 171 to 193: score 26.6, E = 0.0034
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+ksfs+ ++L++H r+H   
   mKIAA1388   171    YKCTL-CDKSFSQSsHLVHHKRTH    193  

ZnF_C2H2: domain 5 of 14, from 199 to 221: score 27.0, E = 0.0025
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + C k+f+++++L+rHm+ H   
   mKIAA1388   199    YKCAV-CEKTFKHRsHLVRHMYAH    221  

ZnF_C2H2: domain 6 of 14, from 256 to 278: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + C+k f+++++L++H r+H   
   mKIAA1388   256    FRCGE-CQKAFKRPsDLRQHERTH    278  

ZnF_C2H2: domain 7 of 14, from 284 to 306: score 27.0, E = 0.0027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C++ f+++ aL rH r+H   
   mKIAA1388   284    FKCDL-CPMGFKQQyALMRHRRTH    306  

ZnF_C2H2: domain 8 of 14, from 312 to 334: score 20.7, E = 0.2
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC + C k f ++++L  H+ vH   
   mKIAA1388   312    FKCGL-CEKGFGQPsHLLYHQHVH    334  

ZnF_C2H2: domain 9 of 14, from 340 to 360: score 8.0, E = 40
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kCp+ C+k f +  +L rH       
   mKIAA1388   340    FKCPV-CQKGFDQSaELLRHKC--    360  

ZnF_C2H2: domain 10 of 14, from 369 to 391: score 29.7, E = 0.0004
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kCp+ C+k +++++aL++H+ +H   
   mKIAA1388   369    FKCPV-CNKAYKRAsALQKHQLSH    391  

	[output cut off at A = 10 top alignments]
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