hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09616/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1388  ( 523 res)   mbg09616

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         258.1    1.2e-73  15
PHD      PHD-finger                                      -4.0       0.69   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/15     45    67 ..     1    24 []     6.0       26
zf-C2H2    2/15     73    95 ..     1    24 []    20.0    0.055
PHD        1/1      74   151 ..     1    51 []    -4.0     0.69
zf-C2H2    3/15    143   165 ..     1    24 []    33.7  4.3e-06
zf-C2H2    4/15    171   193 ..     1    24 []    32.5    1e-05
zf-C2H2    5/15    199   221 ..     1    24 []    31.0  2.7e-05
zf-C2H2    6/15    228   250 ..     1    24 []     3.4       46
zf-C2H2    7/15    256   278 ..     1    24 []    35.8    1e-06
zf-C2H2    8/15    284   306 ..     1    24 []    29.7    7e-05
zf-C2H2    9/15    312   334 ..     1    24 []    25.3   0.0014
zf-C2H2   10/15    340   362 ..     1    24 []    14.0      3.5
zf-C2H2   11/15    369   391 ..     1    24 []    35.5  1.2e-06
zf-C2H2   12/15    399   419 ..     1    24 []     1.8       65
zf-C2H2   13/15    427   449 ..     1    24 []    33.7  4.4e-06
zf-C2H2   14/15    455   477 ..     1    24 []    32.8  7.9e-06
zf-C2H2   15/15    483   505 ..     1    24 []    16.5     0.65

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 15, from 45 to 67: score 6.0, E = 26
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C k F +  +L  H+ +    
   mKIAA1388    45    FQCT-QCLKIFHQATDLLEHQCVQ    67   

zf-C2H2: domain 2 of 15, from 73 to 95: score 20.0, E = 0.055
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C+  Fs   +L +H  +H   
   mKIAA1388    73    FVCG-VCKMGFSLLTSLAQHHSSH    95   

PHD: domain 1 of 1, from 74 to 151: score -4.0, E = 0.69
                   *->yCsvCgkpddd.........aggdllqCDgCdrwfHlaClgpple..
                       C+vC+++++  ++  ++++    ++ C  Cd+ +     +p +  +
   mKIAA1388    74    VCGVCKMGFSLltslaqhhsSHTGMVKCSICDKTY-----KPAEAae 115  

                   .....................eppegkWlCpeCtpk<-*
                   + +++ ++ ++ +++ +  + e pe  + Cp C+     
   mKIAA1388   116 patttapslpsapppaniapvEQPEKPYSCPVCQKP    151  

zf-C2H2: domain 3 of 15, from 143 to 165: score 33.7, E = 4.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C+k F++ s+L rH r+H   
   mKIAA1388   143    YSCP-VCQKPFKHLSELSRHERIH    165  

zf-C2H2: domain 4 of 15, from 171 to 193: score 32.5, E = 1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  C+ksFs++s+L +H+rtH   
   mKIAA1388   171    YKCT-LCDKSFSQSSHLVHHKRTH    193  

zf-C2H2: domain 5 of 15, from 199 to 221: score 31.0, E = 2.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC  +C k+F+++s+L rH+  H   
   mKIAA1388   199    YKCA-VCEKTFKHRSHLVRHMYAH    221  

zf-C2H2: domain 6 of 15, from 228 to 250: score 3.4, E = 46
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C   F+ +s+L +H  t    
   mKIAA1388   228    FRCN-VCELHFKESSELLQHPCTP    250  

zf-C2H2: domain 7 of 15, from 256 to 278: score 35.8, E = 1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C+k+F+r+s+L++H rtH   
   mKIAA1388   256    FRCG-ECQKAFKRPSDLRQHERTH    278  

zf-C2H2: domain 8 of 15, from 284 to 306: score 29.7, E = 7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+  C   F++++ L rH+rtH   
   mKIAA1388   284    FKCD-LCPMGFKQQYALMRHRRTH    306  

zf-C2H2: domain 9 of 15, from 312 to 334: score 25.3, E = 0.0014
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC   C k F ++s+L  H+ +H   
   mKIAA1388   312    FKCG-LCEKGFGQPSHLLYHQHVH    334  

zf-C2H2: domain 10 of 15, from 340 to 362: score 14.0, E = 3.5
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kCp +C+k F ++++L rH+      
   mKIAA1388   340    FKCP-VCQKGFDQSAELLRHKCLP    362  

zf-C2H2: domain 11 of 15, from 369 to 391: score 35.5, E = 1.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kCp +C+k+++r s L++H+ +H   
   mKIAA1388   369    FKCP-VCNKAYKRASALQKHQLSH    391  

zf-C2H2: domain 12 of 15, from 399 to 419: score 1.8, E = 65
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+  C ++F ++s++ +H+  +   
   mKIAA1388   399    LRCT-LCERRFFSSSEFVQHR--C    419  

zf-C2H2: domain 13 of 15, from 427 to 449: score 33.7, E = 4.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       kCp dC k+F+  s+L+rH+r+H   
   mKIAA1388   427    LKCP-DCEKRFKYASDLQRHRRVH    449  

zf-C2H2: domain 14 of 15, from 455 to 477: score 32.8, E = 7.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykCp  C+k+F+++++L++H+ +H   
   mKIAA1388   455    YKCP-SCDKAFKQREHLNKHQGVH    477  

zf-C2H2: domain 15 of 15, from 483 to 505: score 16.5, E = 0.65
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC   Cg++F + + L+ H   H   
   mKIAA1388   483    FKCV-WCGERFLDVALLQEHSAQH    505  

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