hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07509/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1386  ( 1087 res)   mbg07509

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IBR      IBR domain                                      59.4    7.8e-14   2
Ank      Ankyrin repeat                                  52.9      7e-12   2
UIM      Ubiquitin interaction motif                     19.5      0.077   1
zf-LSD1  LSD1 zinc finger                                10.1       0.66   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/2      47    80 ..     1    33 []    17.9     0.25
Ank        2/2     147   179 ..     1    33 []    35.1  1.6e-06
IBR        1/2     405   481 ..     1    72 []    69.0  9.7e-17
zf-LSD1    1/1     522   546 ..     1    25 []    10.1     0.66
IBR        2/2     504   563 ..     1    72 []    -3.0     0.24
UIM        1/1     847   864 ..     1    18 []    19.5    0.077

Alignments of top-scoring domains:
Ank: domain 1 of 2, from 47 to 80: score 17.9, E = 0.25
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                        +TPLH+Aa++g  +++  +l ++  ++n ++    
   mKIAA1386    47    QHNTPLHYAARHGMNRILGTFLFgRDGNPNKRNV    80   

Ank: domain 2 of 2, from 147 to 179: score 35.1, E = 1.6e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +TPLH+Aa +g + +v+lL+++G dl a +    
   mKIAA1386   147    KKNTPLHYAAASGMKACVELLVKHGGDLFAENE    179  

IBR: domain 1 of 2, from 405 to 481: score 69.0, E = 9.7e-17
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlss.g......sk
                      ++Y ++  + +ve n+  kwCP ++C+++vr+t  +s+++++++ s 
   mKIAA1386   405    KRYLQFDIKAFVENNPAIKWCPTAGCERAVRLTKQGSnPsgsdtlSF 451  

                   eepssrrveCskGCgfeFCfnCkeewHgplsC<-*
                   ++  ++ v C k  g+ FC++C+ e+H+p++C   
   mKIAA1386   452 PLLRAPAVDCGK--GHLFCWECLGEAHEPCDC    481  

zf-LSD1: domain 1 of 1, from 522 to 546: score 10.1, E = 0.66
                   *->CggCrtlLmYprGAssVrCalCqtV<-*
                      C +C+ + +   G  + +Ca C      
   mKIAA1386   522    CANCKSPIQKNEGCNHMQCAKCKYD    546  

IBR: domain 2 of 2, from 504 to 563: score -3.0, E = 0.24
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      e Ye++    +++   ++k C +  C+++++++          +++ 
   mKIAA1386   504    EAYEDAANCLWLLT--NSKPCAN--CKSPIQKN---------EGCNH 537  

                   veCskGCgfeFCfnCkeew..HgplsC<-*
                    +C k C + FC+ C+eew++H+ ++    
   mKIAA1386   538 MQCAK-CKYDFCWICLEEWkkHSSSTG    563  

UIM: domain 1 of 1, from 847 to 864: score 19.5, E = 0.077
                   *->mdEEedLqlALalSlqea<-*
                      +++++++ lA++lSlqe+   
   mKIAA1386   847    DEDDPNILLAIQLSLQES    864  

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