hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj40056/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1384 ( 534 res) mfj40056 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 210.4 2.7e-59 6 Kelch_2 Kelch motif 108.8 1.1e-28 6 BACK BTB And C-terminal Kelch 27.0 4.8e-05 1 BTB BTB/POZ domain -4.0 0.053 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 11 87 .. 1 135 [] -4.0 0.053 BACK 1/1 92 185 .. 1 103 [] 27.0 4.8e-05 Kelch_1 1/6 217 265 .. 1 45 [] 10.8 1.6 Kelch_2 1/6 217 265 .. 1 54 [] 12.8 5.2 Kelch_1 2/6 267 317 .. 1 45 [] 41.7 1.6e-08 Kelch_2 2/6 267 317 .. 1 54 [] 13.2 4.6 Kelch_1 3/6 319 364 .. 1 45 [] 58.1 1.9e-13 Kelch_2 3/6 319 364 .. 1 54 [] 30.6 3.6e-05 Kelch_1 4/6 366 411 .. 1 45 [] 46.1 7.6e-10 Kelch_2 4/6 366 411 .. 1 54 [] 19.1 0.11 Kelch_1 5/6 413 462 .. 1 45 [] 26.3 0.00071 Kelch_2 5/6 413 462 .. 1 54 [] 15.5 1.3 Kelch_1 6/6 465 512 .. 1 45 [] 31.9 1.4e-05 Kelch_2 6/6 465 512 .. 1 54 [] 22.3 0.011 Alignments of top-scoring domains: BTB: domain 1 of 1, from 11 to 87: score -4.0, E = 0.053 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ++ +d k l mKIAA1384 11 GTPSSSP----------DD--------K------------------L 21 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks +t+ ++ + l++ s+ ++++Le++Yt+ ++++ mKIAA1384 22 LTSP-------RAIN---NLVLQGCSSIGLRLVLEYLYTANVTLS----- 56 PssckseenvedlLalAadllqipslvdkCeefliksl<-* +++ve++L+ + l+ip ++++C +fl ++ mKIAA1384 57 ------LDTVEEVLSVS-KILHIPQVTKLCVQFLNDQI 87 BACK: domain 1 of 1, from 92 to 185: score 27.0, E = 4.8e-05 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie +++ +A +g+ee +++A++++ e+ l L +e+++ mKIAA1384 92 YKQVCKIAALHGLEETKKLANKYLV---------EDVLLLNFEEMRA 129 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lL s V+sE +f+ + W+ hd e+R +++p+L++ R++L++ + mKIAA1384 130 LLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDLMKRLRFALIPAPE 179 Llevve<-* L+e+v+ mKIAA1384 180 LVERVQ 185 Kelch_1: domain 1 of 6, from 217 to 265: score 10.8, E = 1.6 *->pRsgagvvvldgkiYviGGydg....qslnsvevYDpetntWtklps + + + + +GG +++++ ++n v +YD e++tW++l+ mKIAA1384 217 QSLASRIRSNKKMLLLVGGLPPgpdrLPSNLVQYYDDEKKTWKILTI 263 mp<-* mp mKIAA1384 264 MP 265 Kelch_2: domain 1 of 6, from 217 to 265: score 12.8, E = 5.2 *->pryphasvvpggklyvvGGsfkgnrgtgngdes.ssdllvldpetnv ++ + +++ l++vGG ++++d ++s+ ++++d+e+++ mKIAA1384 217 QSLASRIRSNKKMLLLVGGL------PPGPDRLpSNLVQYYDDEKKT 257 Weklpalp<-* W+ l+ +p mKIAA1384 258 WKILTIMP 265 Kelch_1: domain 2 of 6, from 267 to 317: score 41.7, E = 1.6e-08 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl ++++vv +++ ++v GG d +++++ s+n v +YDp+ n+W +l mKIAA1384 267 NSAHHCVVEVENFLFVLGGEDQwnpngkHSTNFVSRYDPRFNSWIQL 313 psmp<-* p+m+ mKIAA1384 314 PPMQ 317 Kelch_2: domain 2 of 6, from 267 to 317: score 13.2, E = 4.6 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++++h +v +++ l+v GG ++ng +s++ + ++dp+ n+W mKIAA1384 267 NSAHHCVVEVENFLFVLGGE---DQWNPNGKHSTNFVSRYDPRFNSW 310 eklpalp<-* lp++ mKIAA1384 311 IQLPPMQ 317 Kelch_1: domain 3 of 6, from 319 to 364: score 58.1, E = 1.9e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++ ++ ld ++YviGG++ + +l+sve+Y+++tn+W++++s+p mKIAA1384 319 RRASFYACRLDKHLYVIGGRNEtGYLSSVECYNLDTNEWRYVSSLP 364 -* mKIAA1384 - - Kelch_2: domain 3 of 6, from 319 to 364: score 30.6, E = 3.6e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++ ++ lyv+GG+ n ++s++ +++++tn+W mKIAA1384 319 RRASFYACRLDKHLYVIGGR--------NETGYLSSVECYNLDTNEW 357 eklpalp<-* +++++lp mKIAA1384 358 RYVSSLP 364 Kelch_1: domain 4 of 6, from 366 to 411: score 46.1, E = 7.6e-10 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< p + ++ +v++gkiY+ GG+ +++++ + ++YDp+ + W + +m+ mKIAA1384 366 PLAAHAGAVHNGKIYISGGVHNgEYVPWLYCYDPVMDVWARKQDMN 411 -* mKIAA1384 - - Kelch_2: domain 4 of 6, from 366 to 411: score 19.1, E = 0.11 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p++ ha +v +gk+y++GG+ +++e+ l+++dp vW mKIAA1384 366 PLAAHAGAVHNGKIYISGGV--------HNGEYVPWLYCYDPVMDVW 404 eklpalp<-* + +++ mKIAA1384 405 ARKQDMN 411 Kelch_1: domain 5 of 6, from 413 to 462: score 26.3, E = 0.00071 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp +R+ ++ +v+++++Y+iGG ++ ++ + ve+YDp+ ++W +l mKIAA1384 413 KRAIHTLAVMNDRLYAIGGNHLkgfshLDVMLVECYDPKGDQWNILQ 459 smp<-* ++ mKIAA1384 460 TPI 462 Kelch_2: domain 5 of 6, from 413 to 462: score 15.5, E = 1.3 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdll...vldpet r+ h+++v++++ly +GG ++++ s++d++ +++dp+ mKIAA1384 413 KRAIHTLAVMNDRLYAIGGN-------HLKGFSHLDVMlveCYDPKG 452 nvWeklpalp<-* +W l+ + mKIAA1384 453 DQWNILQTPI 462 Kelch_1: domain 6 of 6, from 465 to 512: score 31.9, E = 1.4e-05 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm Rsg g++vld+ iY +GGy+ + + + +s +Y pe++tWt+l mKIAA1384 465 GRSGPGCAVLDDSIYLVGGYSWsmgAYKSSTICYCPEKGTWTELEGD 511 p<-* mKIAA1384 512 V 512 Kelch_2: domain 6 of 6, from 465 to 512: score 22.3, E = 0.011 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ ++v+++ +y+vGG+ + ++ + s+ ++ pe+ +W mKIAA1384 465 GRSGPGCAVLDDSIYLVGGY------SWSMGAYKSSTICYCPEKGTW 505 eklpalp<-* ++l ++ mKIAA1384 506 TELEGDV 512 //