hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06308/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1382  ( 571 res)   mpm06308

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Aa_trans Transmembrane amino acid transporter protein   247.3    2.1e-70   1
TatC     Sec-independent protein translocase protein    -81.7       0.33   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Aa_trans   1/1     136   558 ..     1   461 []   247.3  2.1e-70
TatC       1/1     399   559 ..     1   212 []   -81.7     0.33

Alignments of top-scoring domains:
Aa_trans: domain 1 of 1, from 136 to 558: score 247.3, E = 2.1e-70
                   *->rtisalqavfnlikaivGaGvLsLPyAfkqlGwipGlillvlvglis
                      +t+s++++vfnl++aivG+G+L+L+yA+++ G+ +++ill++v+++s
   mKIAA1382   136    GTTSFGMSVFNLSNAIVGSGILGLSYAMANTGIALFIILLTFVSIFS 182  

                   lytlllLvkcskyldkvekgkrrksYgdlgkasqvsypyrllGpkmgrll
                   ly+ +lL k++       ++ +++ Y +lg        ++++G   g+l+
   mKIAA1382   183 LYSVHLLLKTA-------NEGGSLLYEQLG--------HKAYGLA-GKLA 216  

                   infaillnlfGvcivYlifagdnLpaifdsffsdksgendpchislayfi
                    + +i+ +++G++++Yl ++ + Lp +++  ++ ++ +  ++++  +   
   mKIAA1382   217 ASGSITMQNIGAMSSYLFIVKYELPLVIKALMNIEDTNGLWYLNGDYLVL 266  

                   lifglifipLsvflpnlsaLsilSlvaavssliy........s.igl.li
                   l++++ ++pLs +l+nl +L+++S++++ +++++      ++ +i+ +  
   mKIAA1382   267 LVSLVLILPLS-LLRNLGYLGYTSGLSLLCMIFFlivvickkFqIPCpVE 315  

                   ivilvvivvellvlta......qgvslltaswctPstfiklkglflaiGi
                   +++++  +v +++++a      +++++++   c P +fi++ ++ +a++i
   mKIAA1382   316 AALVANETVNGTFTQAalalafNSTADDA---CRPRYFIFNSQTVYAVPI 362  

                   ivFAfeGhavllpIqntmksTPskFkskpmtkvllvaiiivtvlyilvGl
                   + F+f++h  +lpI++++ks +s    + m+ v+++++ +++++y l++l
   mKIAA1382   363 LTFSFVCHPAVLPIYEELKS-RSR---RRMMNVSKISFFAMFLMYLLAAL 408  

                   vGYltFGnnvkgnillnlpnsdPnpvwliiivnlllvlhlllsyplqafP
                   +GYltF+  v++++l+++    + + +l  +v+l+++++++l++p++ fP
   mKIAA1382   409 FGYLTFYGHVESELLHTYSEIVGTD-ILLLVVRLAVLVAVTLTVPVVIFP 457  

                   ivemienllfrkplednseddeetseilnnasgkhtpkskllrfviRsgl
                   i++ +  ll +                        + +s+l++  i++ +
   mKIAA1382   458 IRSSVTHLLCP-----------------------TKEFSWLRHSIITVTI 484  

                   VvvtyliAwiliPflgdllsLvGAtsgapltfilPplfhlklkkpkkksl
                   + +t l+  i++P   d+++++GA ++a+l+filP+ f++kl k++  ++
   mKIAA1382   485 LSFTNLLV-IFVPTIRDIFGFIGASAAAMLIFILPSAFYIKLVKKE--PM 531  

                   eklwfkkildvicivvglllmaygvyglil<-*
                   + +  +ki   +c+ ++ +++ +g++gli+   
   mKIAA1382   532 RSV--QKIG-ALCFLLSGIVVMIGSMGLIV    558  

TatC: domain 1 of 1, from 399 to 559: score -81.7, E = 0.33
                   *->yRliysliafllaflicfyfskilillllkpllallpagvkliatsp
                       +l+y l+a++  + +   + ++l +  ++ +             + 
   mKIAA1382   399    MFLMYLLAALFGYLTFYGHVESELLHTYSEIV-------------G- 431  

                   tEafftylKlsfflalllslPvilYQiwaFvaPRGL.YkhErrlflplli
                   t+++++ + l+ ++a+ l++Pv +  i   v    L   +E +++++ +i
   mKIAA1382   432 TDILLLVVRLAVLVAVTLTVPVVIFPIRSSVTH-LLcPTKEFSWLRHSII 480  

                   ssflLFllGaaFaYfvvlPlvlkFflsfsqsqndlllgvepepsiseYls
                   +  +L +                           + l v + p+i + + 
   mKIAA1382   481 TVTILSF---------------------------TNLLVIFVPTIRDIFG 503  

                   fvltllfsFGlaFelPvviilLtklgivtpetLkkyRryayvgafiiaAi
                   f+        l+F lP +++    +++v+ e +++  ++   ++f+++ i
   mKIAA1382   504 FIGASAA-AMLIFILPSAFY----IKLVKKEPMRSVQKIG-ALCFLLSGI 547  

                   iTPPtDvlsQillaiP<-*
                   +   +  +  + l+++   
   mKIAA1382   548 VV--M--IGSMGLIVL    559  

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