hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/meg/meg02309/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1380  ( 2428 res)   meg02309

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                     38.7    1.4e-07   1
C1_3     C1-like domain                                   5.5       0.77   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1_3       1/1    1733  1761 ..     1    30 []     5.5     0.77
JmjC       1/1    2270  2369 ..     1   126 []    38.7  1.4e-07

Alignments of top-scoring domains:
C1_3: domain 1 of 1, from 1733 to 1761: score 5.5, E = 0.77
                   *->ktCdaCglpidgdpfYsCseCdFvlHeeCa<-*
                        CdaC   + + +  +C  C Fv +++C    
   mKIAA1380  1733    EMCDACEATLFN-VHWVCRKCGFVACLDCY    1761 

JmjC: domain 1 of 1, from 2270 to 2369: score 38.7, E = 1.4e-07
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                                     ++   + ++++++ +++v ++++ + + + e 
   mKIAA1380  2270    ---------------DSSEIPGALWHIYAGKDVDKIREFLQKISKE- 2300 

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                       l           +++p+ D++++v    + +l L+e G++ +++ Q
   mKIAA1380  2301 --QGLEVL-------PEHDPIRDQSWYVNRKLRQRL-LEEYGVRACTLIQ 2340 

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   ++G++++ ++g+ Hqv+N ++++ ++ +F   
   mKIAA1380  2341 FLGDAIVLPAGTLHQVQNFHSCVQVTEDF    2369 

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