hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbk/mbk00444/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1379 ( 391 res) mbk00444 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SH3 Src homology 3 domains 71.1 1.4e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SH3 1/1 335 391 .] 1 58 [] 71.1 1.4e-16 Alignments of top-scoring domains: SH3: domain 1 of 1, from 335 to 391: score 71.1, E = 1.4e-16 *->eyvvAlYDyeaqnedELsFkkGDiitvleks.ddgWweGelnrtGke ++v+AlYDy++q+ dELsFk+GD +t l +++++gW++G+l+ +G+ mKIAA1379 335 VRVRALYDYDGQEQDELSFKAGDELTKLGEEdEQGWCRGRLD-SGQL 380 GlfPsnYVeeie<-* Gl P+nYV e mKIAA1379 381 GLYPANYV-EAI 391 //