hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbk/mbk00444/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1379  ( 391 res)   mbk00444

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3_1    SH3 domain                                      75.5    1.1e-18   1
SH3_2    Variant SH3 domain                              34.2      3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3_1      1/1     335   391 .]     1    58 []    75.5  1.1e-18
SH3_2      1/1     336   391 .]     1    69 []    34.2    3e-06

Alignments of top-scoring domains:
SH3_1: domain 1 of 1, from 335 to 391: score 75.5, E = 1.1e-18
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd.gWWkgrlkgtgGk
                       +v+ALYDY+++e dELsFk GD++t l ++d++gW++grl++  G+
   mKIAA1379   335    VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEqGWCRGRLDS--GQ 379  

                   eGliPsNYVepv<-*
                    Gl P+NYVe +   
   mKIAA1379   380 LGLYPANYVEAI    391  

SH3_2: domain 1 of 1, from 336 to 391: score 34.2, E = 3e-06
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl
                      ++ra+ dy++ +  +e      Ls+k+Gd +  +   g++d  gw++
   mKIAA1379   336    RVRALYDYDG-QEQDE------LSFKAGDELTKL---GEEDEQGWCR 372  

                   geslggGrrrRGlvPssaveel<-*
                   g++ + G+   Gl P+++ve +   
   mKIAA1379   373 GRL-DSGQL--GLYPANYVEAI    391  

//