hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mek/mek00908/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1378  ( 105 res)   mek00908

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Kelch_1  Kelch motif                                     53.6    4.4e-12   1
Kelch_2  Kelch motif                                     26.4    0.00068   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Kelch_1    1/1      28    73 ..     1    45 []    53.6  4.4e-12
Kelch_2    1/1      28    73 ..     1    54 []    26.4  0.00068

Alignments of top-scoring domains:
Kelch_1: domain 1 of 1, from 28 to 73: score 53.6, E = 4.4e-12
                   *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp<
                      pR g+g++++ gki+++GG++g+ +ln+ve++Dp+ n+W+ + + + 
   mKIAA1378    28    PRGGVGIATVMGKIFAVGGHNGnAYLNTVEAFDPVLNKWELVGPVS  73   

                   -*
                     
   mKIAA1378     -    -    

Kelch_2: domain 1 of 1, from 28 to 73: score 26.4, E = 0.00068
                   *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW
                      pr+++ ++++ gk++ vGG+        ng+ +++++  +dp  n+W
   mKIAA1378    28    PRGGVGIATVMGKIFAVGGH--------NGNAYLNTVEAFDPVLNKW 66   

                   eklpalp<-*
                   e + ++    
   mKIAA1378    67 ELVGPVS    73   

//