hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05366/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1375  ( 909 res)   mpm05366

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BRO1     BRO1-like domain                               307.9    1.2e-88   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BRO1       1/1      43   207 ..     1   172 []   307.9  1.2e-88

Alignments of top-scoring domains:
BRO1: domain 1 of 1, from 43 to 207: score 307.9, E = 1.2e-88
                   *->efLsipLKkTsevDlvkpLtkyIsntYgsskcerpssyaedalqeLs
                       f++++LKkTsevDl+kpL k+I++tY+s++ e++++y+ +a +eLs
   mKIAA1375    43    SFIWVQLKKTSEVDLAKPLVKFIQQTYPSGG-EEQAQYC-RAAEELS 87   

                   kLRnqaisvgrpldkseagrldvllrYYqqLcaLenkFpssedqHigveF
                   kLR+ a   grpldk+e + l++llrYY+q+c++e+kFp+se+q i+++F
   mKIAA1375    88 KLRRSA--LGRPLDKHEGA-LETLLRYYDQICSIEPKFPFSENQ-ICLTF 133  

                   tWyDafdkgslFgssvklsqssLaFEKAcVLFNigalySqiAasqinrtt
                   tW+DafdkgslFg+svkl++ sL++EK+cVLFN++al+SqiAa+q n+++
   mKIAA1375   134 TWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQ-NLDN 182  

                   ddglKqAckyFQqAAGaFahlrdnf<-*
                   d+glK+A+k +Q A+GaF h++d++   
   mKIAA1375   183 DEGLKTAAKQYQFASGAFLHIKDTV    207  

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