hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01605/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1374  ( 446 res)   mpj01605

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   107.3    1.8e-27   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6       7    48 ..     1    46 []    15.0      2.1
WD40       2/6     102   141 ..     1    46 []    31.0  0.00017
WD40       3/6     143   183 ..     1    46 []     6.4       47
WD40       4/6     184   223 ..     1    46 []    30.4  0.00025
WD40       5/6     226   263 ..     1    46 []    20.3     0.27
WD40       6/6     265   304 ..     1    46 []     6.4       48

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 7 to 48: score 15.0, E = 2.1
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                      + +l  +l++++ H+    V++v +          + l+s+s+D++i
   mKIAA1374     7    DmRLKISLSkepKHQE--LVSCVGWTTA-------EELYSCSdDHQI 44   

                   rlWd<-*
                     W+   
   mKIAA1374    45 VKWN    48   

WD40: domain 2 of 6, from 102 to 141: score 31.0, E = 0.00017
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++ ++ ++H g  +V++ +++  g      + l++ ++Dg++++W
   mKIAA1374   102    LgRVEKSVEAHCG--AVLAGRWNYEG------TALVTVGeDGQVKIW 140  

                   d<-*
                   +   
   mKIAA1374   141 S    141  

WD40: domain 3 of 6, from 143 to 183: score 6.4, E = 47
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+ l +tl       pV+sva+ pd+     +++l+++++   i+  
   mKIAA1374   143    TgMLRSTLAQQGT--PVYSVAWGPDS-----EKVLYTAGkQLIIKPL 182  

                   d<-*
                       
   mKIAA1374   183 Q    183  

WD40: domain 4 of 6, from 184 to 223: score 30.4, E = 0.00025
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  +  +k+H+g   ++ v++++ +      +l++s+++D++ ++W
   mKIAA1374   184    PnAKVLQWKAHDG--IILKVDWNSVN------DLILSAGeDCKYKVW 222  

                   d<-*
                   d   
   mKIAA1374   223 D    223  

WD40: domain 5 of 6, from 226 to 263: score 20.3, E = 0.27
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + l  + + H++  p+tsva+ pdg      +l+a+gs    +rl 
   mKIAA1374   226    GrVLYGSQP-HEH--PITSVAWAPDG------ELFAVGSfHT-LRLC 262  

                   d<-*
                   d   
   mKIAA1374   263 D    263  

WD40: domain 6 of 6, from 265 to 304: score 6.4, E = 48
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   +  k  tg  ++  +a+s dg      +++a ++++g++ + 
   mKIAA1374   265    TgWSYALEKPNTG--SIFNIAWSIDG------TQIAGACgNGHVVFA 303  

                   d<-*
                   +   
   mKIAA1374   304 H    304  

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