hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01605/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1374  ( 446 res)   mpj01605

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        88.4    1.4e-22   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4      12    48 ..     1    38 []    11.8        7
WD40       2/4     104   141 ..     1    38 []    24.9   0.0019
WD40       3/4     186   223 ..     1    38 []    24.4   0.0027
WD40       4/4     227   263 ..     1    38 []    31.6  1.8e-05

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 12 to 48: score 11.8, E = 7
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        l+  + H+  V+cv +     + l s+S+D+ i  W+   
   mKIAA1374    12    ISLSKEpKHQELVSCVGWTTA--EELYSCSDDHQIVKWN    48   

WD40: domain 2 of 4, from 104 to 141: score 24.9, E = 0.0019
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       + ++ ++H ++V + +++ + g+ l++ ++Dg +kiW+   
   mKIAA1374   104    RVEKSVeAHCGAVLAGRWNYE-GTALVTVGEDGQVKIWS    141  

WD40: domain 3 of 4, from 186 to 223: score 24.4, E = 0.0027
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +   ++H + +  v+++     l++s+++D++ k+Wd   
   mKIAA1374   186    AKVLQWkAHDGIILKVDWNSV-NDLILSAGEDCKYKVWD    223  

WD40: domain 4 of 4, from 227 to 263: score 31.6, E = 1.8e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +l+  + H++p+t+va++pd g+l+a gS  +t+++ d   
   mKIAA1374   227    RVLYGSqPHEHPITSVAWAPD-GELFAVGSF-HTLRLCD    263  

//