hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg05137/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1365 ( 1497 res) mbg05137 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_PS Leucine-rich repeat, plant-specific subfamil 149.8 2.8e-40 15 LRR_TYP Leucine-rich repeats, typical (most populate 115.5 6.1e-30 11 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. 79.9 3.2e-19 1 LRR_BAC Leucine-rich repeats, bacterial type 40.5 2.3e-07 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_BAC 1/10 54 71 .. 1 20 [] 3.6 2.1e+02 LRR_PS 1/15 53 74 .. 1 24 [] 5.8 2.1e+02 LRR_TYP 1/11 55 75 .. 1 24 [] 16.3 4.2 LRR_BAC 2/10 75 94 .. 1 20 [] 5.5 1.2e+02 LRR_PS 2/15 75 97 .. 1 24 [] 12.7 27 LRR_BAC 3/10 98 117 .. 1 20 [] 6.3 93 LRR_TYP 2/11 98 120 .. 1 24 [] 9.9 26 LRR_PS 3/15 98 120 .. 1 24 [] 7.8 1.2e+02 LRR_PS 4/15 121 143 .. 1 24 [] 6.0 2e+02 LRR_TYP 3/11 144 166 .. 1 24 [] 7.6 49 LRR_PS 5/15 144 166 .. 1 24 [] 6.3 1.8e+02 LRR_BAC 4/10 167 186 .. 1 20 [] 8.9 43 LRR_TYP 4/11 167 189 .. 1 24 [] 13.8 8.6 LRR_PS 6/15 167 189 .. 1 24 [] 13.8 19 LRR_BAC 5/10 190 209 .. 1 20 [] 15.6 5.6 LRR_TYP 5/11 190 212 .. 1 24 [] 18.7 0.81 LRR_PS 7/15 190 212 .. 1 24 [] 17.7 1.7 LRR_TYP 6/11 213 235 .. 1 24 [] 8.7 36 LRR_PS 8/15 213 235 .. 1 24 [] 12.1 32 LRR_PS 9/15 236 258 .. 1 24 [] 10.4 53 LRR_TYP 7/11 236 259 .. 1 24 [] 7.7 48 LRR_BAC 6/10 259 278 .. 1 20 [] 2.7 2.8e+02 LRR_TYP 8/11 260 281 .. 1 24 [] 1.1 3e+02 LRR_PS 10/15 259 281 .. 1 24 [] 14.5 15 LRR_BAC 7/10 282 301 .. 1 20 [] 14.2 8.7 LRR_PS 11/15 282 304 .. 1 24 [] 17.3 2.1 LRR_TYP 9/11 282 305 .. 1 24 [] 19.7 0.42 LRR_BAC 8/10 305 324 .. 1 20 [] 4.1 1.8e+02 LRR_PS 12/15 305 327 .. 1 24 [] 10.0 60 LRR_BAC 9/10 328 347 .. 1 20 [] 7.9 57 LRR_PS 13/15 328 350 .. 1 24 [] 12.2 31 LRR_TYP 10/11 328 351 .. 1 24 [] 17.2 2.4 LRR_PS 14/15 351 373 .. 1 24 [] 15.2 9.6 LRR_BAC 10/10 374 393 .. 1 20 [] 9.8 32 LRR_PS 15/15 374 396 .. 1 24 [] 17.7 1.6 LRR_TYP 11/11 374 396 .. 1 24 [] 16.8 3 PDZ 1/1 1415 1495 .. 1 80 [] 79.9 3.2e-19 Alignments of top-scoring domains: LRR_BAC: domain 1 of 10, from 54 to 71: score 3.6, E = 2.1e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L+eL+ + N+++eLP mKIAA1365 54 --TLEELYLDANQIEELPKQ 71 LRR_PS: domain 1 of 15, from 53 to 74: score 5.8, E = 2.1e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* + L++L+L N++ e+P++l+n mKIAA1365 53 -RTLEELYLDANQIE-ELPKQLFN 74 LRR_TYP: domain 1 of 11, from 55 to 75: score 16.3, E = 4.2 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+eL+L+ Nq+++LP ++F++ mKIAA1365 55 ---LEELYLDANQIEELPKQLFNC 75 LRR_BAC: domain 2 of 10, from 75 to 94: score 5.5, E = 1.2e+02 *->PpsLkeLnvsnNrLteLPeL<-* ++L++L + +N L++LP mKIAA1365 75 CQALRKLSIPDNDLSSLPTS 94 LRR_PS: domain 2 of 15, from 75 to 97: score 12.7, E = 27 *->LtsLqvLdLsnNnLsGeIPsslgn<-* ++ L+ L + +N Ls ++P+s+ + mKIAA1365 75 CQALRKLSIPDNDLS-SLPTSIAS 97 LRR_BAC: domain 3 of 10, from 98 to 117: score 6.3, E = 93 *->PpsLkeLnvsnNrLteLPeL<-* +LkeL++s N e+Pe+ mKIAA1365 98 LVNLKELDISKNGVQEFPEN 117 LRR_TYP: domain 2 of 11, from 98 to 120: score 9.9, E = 26 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL+eLd s N ++ P+++ + mKIAA1365 98 LVNLKELDISKNGVQEFPENI-KC 120 LRR_PS: domain 3 of 15, from 98 to 120: score 7.8, E = 1.2e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++Ld+s N e+P+++ mKIAA1365 98 LVNLKELDISKNGVQ-EFPENIKC 120 LRR_PS: domain 4 of 15, from 121 to 143: score 6.0, E = 2e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* ++ L++++ s N +s ++P+ + + mKIAA1365 121 CKCLTIIEASVNPIS-KLPDGFTQ 143 LRR_TYP: domain 3 of 11, from 144 to 166: score 7.6, E = 49 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL+ L+L++ L+ LP++ F+ mKIAA1365 144 LLNLTQLYLNDAFLEFLPAN-FGR 166 [output cut off at A = 10 top alignments] //