hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16438/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1364  ( 776 res)   mbg16438

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
CH            Calponin homology (CH) domain             117.3    2.8e-31   1
FAD_binding_3 FAD binding domain                       -140.1      0.061   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
FAD_binding_3   1/1      88   454 ..     1   384 []  -140.1    0.061
CH              1/1     522   626 ..     1   121 []   117.3  2.8e-31

Alignments of top-scoring domains:
FAD_binding_3: domain 1 of 1, from 88 to 454: score -140.1, E = 0.061
                   *->etdVLIVGgGPaGLmlAllLaraGvrvvvvErhaetsvlprIRAggl
                       t+ LI+G+GP+GL +A+ L++ G++vvv+E+++ +s++      +l
   mKIAA1364    88    NTKCLIIGAGPCGLRTAIDLSLLGAKVVVIEKRDAFSRNN-----VL 129  

                   nqRTMElLrqaGledrilaegaphegmglffgatSlaGDElgrirtwgti
                   +   + + + +Gl       ga++ + g+f  +                 
   mKIAA1364   130 HLWPFTIHDLRGL-------GAKKFY-GKFCAGA---------------- 155  

                   pdaradldFetlltsptrvtvypQnelEpiLrehAeelGsadirfgtevl
                         +d    + s ++  +        iL++ A  lG  +i+++ e++
   mKIAA1364   156 ------ID----HISIRQLQL--------ILLKVALILG-IEIHVNVEFQ 186  

                   sfeq...DgdgVtAvvrdrrtgeeiEiytvrArY....lVGcDGgrStVR
                   +++q+++D+++++   r     ++       ++Y+ + ++G DG+    R
   mKIAA1364   187 GLVQppeDQENERIGWRALVHPKT----HPVSEYefevIIGGDGR----R 228  

                   kal.GiefeGeg.tiypagsldvlfdapdlselve.grafvvylilnphs
                    +l+G+ ++ +++++  a  +  +f  +++++ ++ + +++v +i+n++ 
   mKIAA1364   229 NTLeGFRRKEFRgKL--AIAITANFINRNTTAEAKvEEISGVAFIFNQK- 275  

                   rGfglgiavv........................................
                     f++  + +++ + ++    +++++    + ++++  +++   ++ +++
   mKIAA1364   276 --FFQELREAtgidlenivyykddthyfvmtakkqslldkgvilhdytdt 323  

                   RmvgPtrsgglerrvivvpfgekvedrpeevteeelkqalreatgidfll
                     + ++++  +e    +  ++++++d + ++  + l  a+    ++d ++
   mKIAA1364   324 ELLLSRENVDQE---ALLNYAREAADFSTQQQLPSLDFAINHYGQPDVAM 370  

                   veitwksawgvasrvAdryRkG.RVFLAGDAAHihPPtGGqGlNtgiQDA
                    ++t + a ++a+ v ++  +   V L+GD     +  +G G+  g+  A
   mKIAA1364   371 FDFTCMYASENAALVREQNGHQlLVALVGDSLLEPFWPMGTGIARGFLAA 420  

                   fNLaWKLAaVLrGtAgeeLLDtYeaERrpvaqavvdra<-*
                   ++ aW       Gt + e L    aER  + + + + +   
   mKIAA1364   421 MDSAWMVRSWSLGTSPLEVL----AERESIYRLLPQTT    454  

CH: domain 1 of 1, from 522 to 626: score 117.3, E = 2.8e-31
                   *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL
                      +   ll W++++++gy g         v++t+++++w+ +GlaLca+
   mKIAA1364   522    RSSKLLGWCQRQTEGYSG---------VNVTDLTMSWK-SGLALCAI 558  

                   lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi
                   ++++rP+lid++   sl++++   N +la+d+aeke lgi  ++++ +++
   mKIAA1364   559 IHRYRPDLIDFD---SLDEQNVEKNNQLAFDIAEKE-LGI-SPIMTGKEM 603  

                   vegnpdPDeklvltllwqLirrfq<-*
                   +++++ PD+++ +++l q++ +f+   
   mKIAA1364   604 ASVGE-PDKLSMVMYLTQFYEMFK    626  

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