hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mek/mek02143/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1363 ( 422 res) mek02143 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Abhydrolase_3 alpha/beta hydrolase fold 166.9 3.3e-46 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Abhydrolase_3 1/1 123 396 .. 1 247 [] 166.9 3.3e-46 Alignments of top-scoring domains: Abhydrolase_3: domain 1 of 1, from 123 to 396: score 166.9, E = 3.3e-46 *->lvYfHGGGFvlGsldth.YdalcrrLAaragavVvSVDYRLAPEhpf ++Y+HGGG+ l s+ Yd lc+ +A++++av+vS++YRL P+ f mKIAA1363 123 VIYIHGGGWALASAKISyYDQLCTTMAEELNAVIVSIEYRLVPQVYF 169 PAAvdDayaAlrWlaehavgsggeddp.wlelgaDpsriavaGDSAGGNL P ++ D+ +A+++ ++ ++ ++ +Dp+r+++ GDSAGGNL mKIAA1363 170 PEQIHDVIRATKYFLQP--------EVlD-KYKVDPGRVGISGDSAGGNL 210 AaavAqlrardrGgplaeldpdlspvrpagqvLiyPfFggtDlrertese Aaa+ + + ++ ++++ q+L+yP++ ++D+++++ mKIAA1363 211 AAALG-QQFTYVASLK---------NKLKLQALVYPVLQALDFNTPSYQQ 250 syrlsreyadgplLtrdamdwfwrlYL.pgadrddP..........as.l s+ + +p+L+r m ++w Y+++ d+ +++++ ++ + mKIAA1363 251 SM--N-----TPILPRHVMVRYWLDYFkGNYDFVEAmivnnhtsldVErA 293 asPlfapaspdlegLsGLPP.............................. a+ l+a +l++ s LP + +++ ++ +++++ + ++ ++ + mKIAA1363 294 AA-LRA----RLDWTSLLPSsikknykpimqttgnarivqeipqlldaaa 338 ...............alvvvAefDpLrDegeaYAerLraWaGVpVelvey ++ +++ + +++++ ++e+D+LrD+g++YA+rL++ aGV V+l ++ mKIAA1363 339 spliaeqevlealpkTYILTCEHDVLRDDGIMYAKRLES-AGVNVTLDHF 387 pGmiHgFll<-* ++ +Hg ++ mKIAA1363 388 EDGFHGCMI 396 //