hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg03452/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1358 ( 1038 res) mbg03452 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Hyd_WA Propeller 351.5 9.1e-102 9 PH PH domain 21.1 0.026 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Hyd_WA 1/9 81 112 .. 1 34 [] 43.5 4.6e-09 Hyd_WA 2/9 126 157 .. 1 34 [] 43.5 4.7e-09 Hyd_WA 3/9 173 204 .. 1 34 [] 44.2 2.9e-09 Hyd_WA 4/9 216 248 .. 1 34 [] 43.4 5e-09 PH 1/1 486 594 .. 1 92 [] 21.1 0.026 Hyd_WA 5/9 606 633 .. 1 34 [] 31.7 1.7e-05 Hyd_WA 6/9 830 861 .. 1 34 [] 43.5 4.6e-09 Hyd_WA 7/9 875 906 .. 1 34 [] 43.7 4.2e-09 Hyd_WA 8/9 921 952 .. 1 34 [] 43.6 4.4e-09 Hyd_WA 9/9 964 1004 .. 1 34 [] 43.2 5.9e-09 Alignments of top-scoring domains: Hyd_WA: domain 1 of 9, from 81 to 112: score 43.5, E = 4.6e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +VWa++ +G++++R+ Vs +nP+Gs+ W +++ mKIAA1358 81 LSVWAVS-LQGKVWYREDVSHPNPEGSS-WSLVE 112 Hyd_WA: domain 2 of 9, from 126 to 157: score 43.5, E = 4.7e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* d +Wa ++G+++vR+GV+r nP+Gs+ W +++ mKIAA1358 126 DLIWATL-WEGQALVREGVCRNNPKGSY-WSMVE 157 Hyd_WA: domain 3 of 9, from 173 to 204: score 44.2, E = 2.9e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +VWait +d+++++R GV + nP G++ W++++ mKIAA1358 173 SVVWAIT-KDRKVWFRRGVNSHNPCGTS-WIEMV 204 Hyd_WA: domain 4 of 9, from 216 to 248: score 43.4, E = 5e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* d+VW+i++ d+ +++R GV++s++sG+ W+ i+ mKIAA1358 216 DQVWGISCEDRAVYFRQGVTPSELSGKT-WKAIV 248 PH: domain 1 of 1, from 486 to 594: score 21.1, E = 0.026 *->vikeGwLlkkg..gkkswkkRyfvLfn.........dvLlyykdkk. +k G L+ + + + +w ++ + L + +++++ +++ L++y ++ mKIAA1358 486 WVKTGALQWWCdwKPHKWVDVRVALEQftghdgardSILFIYYVVHe 532 kkpkgsipLsgiqvekvpdnkrkncFeirt.dr....etlllqaeseeer +k+ + L++++v ++ n+ k++F + t++r++++ + l+a++e+++ mKIAA1358 533 EKKYLHVFLNEVTVLVPVLNEAKHSFALYTpERtrqrWPVRLAAATEQDM 582 keWvkaiqsair<-* ++W++ ++ ++ mKIAA1358 583 NDWLALLSLSCC 594 Hyd_WA: domain 5 of 9, from 606 to 633: score 31.7, E = 1.7e-05 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +a+W++t ++Gdif Vs+++P++++ e++l mKIAA1358 606 QAIWSVT-CKGDIF----VSEPSPDLEA-RERLL 633 Hyd_WA: domain 6 of 9, from 830 to 861: score 43.5, E = 4.6e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* a+Wa++ +Gd+++R GVs+ nP+Gs+ W h+ mKIAA1358 830 VALWAVS-DKGDVLCRLGVSELNPAGSS-WLHVG 861 Hyd_WA: domain 7 of 9, from 875 to 906: score 43.7, E = 4.2e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +VWa+ dG +f+R +Vs+s P+G+ W hi+ mKIAA1358 875 YQVWAVA-RDGSAFYRGSVSPSQPAGDC-WYHIP 906 Hyd_WA: domain 8 of 9, from 921 to 952: score 43.6, E = 4.4e-09 *->daVWaitasdGdifvRtGVsrsnPsGsdaWehil<-* +V+a++ +G++++R G+++s P+Gs+ Weh+ mKIAA1358 921 TSVYALD-ENGNLWYRAGITPSYPQGSS-WEHVS 952 Hyd_WA: domain 9 of 9, from 964 to 1004: score 43.2, E = 5.9e-09 *->daVWaita........sdGdifvRtGVsrsnPsGsdaWehil<-* d+VW+i ++ +++++ s+G++++R+GV++++P+G++ W + + mKIAA1358 964 DQVWVIANkvqgshglSRGTVCRRMGVQPREPKGQG-WDYGI 1004 //