hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm05201/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1355 ( 1189 res) mpm05201 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IG Immunoglobulin 163.1 2.8e-44 5 IGc2 Immunoglobulin C-2 Type 116.2 3.7e-30 5 FN3 Fibronectin type 3 domain 63.6 2.4e-14 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IGc2 1/5 42 125 .. 1 56 [] 1.6 3.7 IG 1/5 36 141 .. 1 58 [] 35.2 8.6e-06 IGc2 2/5 159 223 .. 1 56 [] 54.8 1.1e-11 IG 2/5 153 234 .. 1 58 [] 53.7 2.4e-11 IGc2 3/5 249 318 .. 1 56 [] 22.5 0.025 IG 3/5 243 330 .. 1 58 [] 41.7 9.9e-08 IGc2 4/5 345 412 .. 1 56 [] 0.8 4.6 IG 4/5 339 422 .. 1 58 [] 7.9 26 IGc2 5/5 441 503 .. 1 56 [] 37.3 2.1e-06 IG 5/5 434 514 .. 1 58 [] 28.3 0.0011 FN3 1/2 518 603 .. 1 69 [] 29.7 0.00041 FN3 2/2 634 715 .. 1 69 [] 34.3 1.6e-05 Alignments of top-scoring domains: IGc2: domain 1 of 5, from 42 to 125: score 1.6, E = 3.7 *->leGqsVtLtCpasgdpvp......nItWlk.gkplp........... + G+s++L C+ p +++++ + I Wl+ g lp + + +++ mKIAA1355 42 RAGESAVLGCD--LLPPAgrpplhVIEWLRfGFLLPifiqfglyspr 86 ............sgstLtiknvsleDsGlYtCvArNsvg<-* +++ ++ + ++g +L+i+ ++eD G Y+C++ mKIAA1355 87 idpdyvgrvrlqTGASLQIEGLRVEDQGWYECRVLFLDQ 125 IG: domain 1 of 5, from 36 to 141: score 35.2, E = 8.6e-06 *->pp.vtvkeGesvtLtC.as.........titWy.............. +v++++Ges++L C+ ++ + ++ + i W++ + + + + mKIAA1355 36 VVsVVGRAGESAVLGCdLLppagrpplhVIEWLrfgfllpifiqfgl 82 ....................LtI.nvtpeDsesgGtYtCaat......sg +++ +++ ++ + +++ +L+I+++++eD+ G Y C++ + ++ mKIAA1355 83 yspridpdyvgrvrlqtgasLQIeGLRVEDQ---GWYECRVLfldqhsPE 129 sasseqgttLtVl<-* ++++ +g +++ + mKIAA1355 130 QDFA-NGSWVHLT 141 IGc2: domain 2 of 5, from 159 to 223: score 54.8, E = 1.1e-11 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn +e ++VtL+C a+g+p p +tW+++g+ l +++++ + ++tL i++ mKIAA1355 159 KELEAVTLRCVARGSPQPYVTWKFrGQDLGkgqgqvqvQNGTLWIRR 205 vsleDsGlYtCvArNsvg<-* v+++ +G YtC+A++s g mKIAA1355 206 VERGSAGDYTCQASSSEG 223 IG: domain 2 of 5, from 153 to 234: score 53.7, E = 2.4e-11 *->pp.vtvkeGesvtLtC.as.....titWy.................. p ++vke e vtL+C a +++ +++tW+ ++++ ++++++ + +++ mKIAA1355 153 PLvLEVKELEAVTLRCvARgspqpYVTWKfrgqdlgkgqgqvqvqng 199 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L I++v++ + G+YtC+a+++ gs++ t+L Vl mKIAA1355 200 tLWIrRVERGSA---GDYTCQASssEGSITH--ATQLLVL 234 IGc2: domain 3 of 5, from 249 to 318: score 22.5, E = 0.025 *->leGqsVtLtCpasgdpvp.nItWlk.gkplp............sgst ++ q+V+L C+a+++p+ + +W+ +g + + ++ +++ + +++ mKIAA1355 249 NSSQDVSLACRAEAYPANlTYSWFQdGVNVFhisrlqsrvrilVDGS 295 LtiknvsleDsGlYtCvArNsvg<-* L ++ +++D+G+YtCv +N mKIAA1355 296 LWLQATQPDDAGHYTCVPSNGFL 318 IG: domain 3 of 5, from 243 to 330: score 41.7, E = 9.9e-08 *->pp.vtvkeGesvtLtC.as......titWy................. p++ tv+ ++v+L C+a+ + + t++W++++ + + ++ +++ + mKIAA1355 243 PSnSTVNSSQDVSLACrAEaypanlTYSWFqdgvnvfhisrlqsrvr 289 ......LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-* +++L ++ +p+D+ G YtC+ +++ + s+ +++LtVl mKIAA1355 290 ilvdgsLWLqATQPDDA---GHYTCVPSngfLHPPSA--SAYLTVL 330 IGc2: domain 4 of 5, from 345 to 412: score 0.8, E = 4.6 *->leGqsVtLtCpasgdpvpn.ItWlk.gkplp....sgstL.....ti G +++Cp++++p +tW+k+g+ l+ ++ g++L+++++ i mKIAA1355 345 PTGMRGVIRCPVRANPPLLfVTWTKdGQALQldkfPGWSLgpegsLI 391 knvsleDs.GlYtCvArNsvg<-* eD+ G+Y+C+ Ns g mKIAA1355 392 IALGNEDAlGEYSCTPYNSLG 412 IG: domain 4 of 5, from 339 to 422: score 7.9, E = 26 *->pp.vtvkeGesvtLtC.as......titWy................. pp++ G + +++C++ +++ +tW+++++ + ++ ++ + + mKIAA1355 339 PPeTPLPTGMRGVIRCpVRanppllFVTWTkdgqalqldkfpgwslg 385 ....LtInvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* + ++L+I + eD+ G+Y C+ +s + + + +t mKIAA1355 386 pegsLIIALGNEDA--LGEYSCTPYnSLGTAG--PSPVTRV 422 IGc2: domain 5 of 5, from 441 to 503: score 37.3, E = 2.1e-06 *->leGqsVtLtCpasgdpvpnItWlk.gkplp......sgstLtiknvs + G+ + ++C a+gdp p ++W k g l+++ + +s+++L +++ + mKIAA1355 441 EVGRELLIPCSARGDPPPIVSWAKvGRGLQgqaqvdSNNSLVLRPLT 487 leDsGlYtCvArNsvg<-* +e G+ +C+A+N+v mKIAA1355 488 KEAQGRWECSASNAVA 503 IG: domain 5 of 5, from 434 to 514: score 28.3, E = 0.0011 *->pp.vtvke.GesvtLtC.as.....titWy................. p++ + +e G + ++C+a +++++ ++W + +++ +++ + +++++ mKIAA1355 434 PKeEYFQEvGRELLIPCsARgdpppIVSWAkvgrglqgqaqvdsnns 480 LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+++++t+e + G C a++ ++ +t+++Vl mKIAA1355 481 LVLrPLTKEAQ---GRWECSASnaVARVTT--STNVYVL 514 [output cut off at A = 10 top alignments] //