hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm05201/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1355 ( 1189 res) mpm05201 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ig Immunoglobulin domain 112.1 1e-29 5 I-set Immunoglobulin I-set domain 103.9 3.2e-27 3 fn3 Fibronectin type III domain 85.8 8.5e-22 2 V-set Immunoglobulin V-set domain 47.2 3.6e-10 3 Extensin_2 Extensin-like region -118.7 0.072 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/5 44 120 .. 1 65 [] 6.5 13 V-set 1/3 14 143 .. 1 130 [] 15.9 0.016 ig 2/5 161 218 .. 1 65 [] 41.6 1.8e-08 I-set 1/3 146 234 .. 1 97 [] 63.1 5.8e-15 V-set 2/3 145 234 .. 1 130 [] 6.9 0.12 ig 3/5 251 313 .. 1 65 [] 19.9 0.062 I-set 2/3 237 330 .. 1 97 [] 22.2 0.0002 V-set 3/3 236 330 .. 1 130 [] 25.4 0.0013 ig 4/5 347 407 .. 1 65 [] 20.1 0.053 ig 5/5 443 498 .. 1 65 [] 24.0 0.0036 I-set 3/3 428 514 .. 1 97 [] 18.6 0.00039 fn3 1/2 518 606 .. 1 84 [] 43.2 5.7e-09 fn3 2/2 634 718 .. 1 84 [] 42.9 7e-09 Extensin_2 1/1 757 1076 .. 1 385 [] -118.7 0.072 Alignments of top-scoring domains: ig: domain 1 of 5, from 44 to 120: score 6.5, E = 13 *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst Ges+ L C ++ ++pp + Wlr g l+ + + + + ++ d + mKIAA1355 44 GESAVLGCDLLppAGRPPLHVIEWLRFGFlLPiFIQFGLYSPRIDPD 90 yqt........sLtitnvtpeDggtYtCvv<-* y + + +++ sL+i ++ eD g Y C+v mKIAA1355 91 YVGrvrlqtgaSLQIEGLRVEDQGWYECRV 120 V-set: domain 1 of 3, from 14 to 143: score 15.9, E = 0.016 *->qstvtqepprLLLASL.fW.p.t.......svtvaeGgsvtLpCtys ++ +t + +++++++++++ sv++ G+s+ L C + mKIAA1355 14 CLRLTV-LSL-----IiSQgAdGrrkpevvSVVGRAGESAVLGCDLL 54 GtfddsssssgtgsvyWyrqqppGekpeliiisyytyysysegngtvser ++ ++ ++ ++ + W r + + + + ++ ++ mKIAA1355 55 -PPAGR-PPLHV--IEWLR-FGFLLPIFIQF-----GLYSP----RIDPD 90 fkgrvrfsgnpskgdfsLtIsnlqlsDsGtYyCa...............g + grvr ++ +sL+I l+++D G Y C + ++++ + +g mKIAA1355 91 YVGRVR-----LQTGASLQIEGLRVEDQGWYECRvlfldqhspeqdfanG 135 ggtrLtVl<-* + ++LtV mKIAA1355 136 SWVHLTVN 143 ig: domain 2 of 5, from 161 to 218: score 41.6, E = 1.8e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e vtL+C + g+p+++vtW++ g++l++g+ + +++n++ mKIAA1355 161 LEAVTLRCVA--RGSPQPYVTWKFRGQdLGkGQGQVQVQNGT----- 200 tsLtitnvtpeDggtYtCvv<-* L i++v+++ +g YtC++ mKIAA1355 201 --LWIRRVERGSAGDYTCQA 218 I-set: domain 1 of 3, from 146 to 234: score 63.1, E = 5.8e-15 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P+F p+ +eV+e e++++ C ++G+P+P V+W+ Gq+l mKIAA1355 146 PQFQETPpLVLEVKELEAVTLRCVARGSPQPYVTWKFRGQDLGK--- 189 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV ++ + +g tL+I++v+++ +G YtC+A+ s G+ + +L V mKIAA1355 190 -GQGQVQVQNG-----TLWIRRVERGSAGDYTCQASSSEGSITHATQLLV 233 q<-* mKIAA1355 234 L 234 V-set: domain 2 of 3, from 145 to 234: score 6.9, E = 0.12 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + + +++pp ++ v+e + vtL+C + +++ mKIAA1355 145 PPQFQETPPL----------VLEVKELEAVTLRCVAR---GSP---- 174 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++ +v+W + + + + kg +++++ mKIAA1355 175 QP-YVTWKF-RGQ---------------DLG----------KGQGQVQVQ 197 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* ++ +L I+++++ G Y+C+ ++++++ + t+L Vl mKIAA1355 198 NG----TLWIRRVERGSAGDYTCQasssegsiTHATQLLVL 234 ig: domain 3 of 5, from 251 to 313: score 19.9, E = 0.062 *->GesvtLtCsvsgfgppdvtvtWlrngk..lt.gvlvtssenngdsty ++v+L C++ +p t++W+++g + + + l+ ++ +d++ mKIAA1355 251 SQDVSLACRAE-AYPANLTYSWFQDGVnvFHiSRLQSRVRILVDGS- 295 qtsLtitnvtpeDggtYtCvv<-* L +++++p+D+g YtCv mKIAA1355 296 ---LWLQATQPDDAGHYTCVP 313 I-set: domain 2 of 3, from 237 to 330: score 22.2, E = 0.0002 *->PkFtqkpkdveVqeGesarfeCkVtGtPe.PtVsWfKdG......qp P+++ +p++ +V+ +++++ C+++ +P + t sWf dG + + + mKIAA1355 237 PVIVVPPSNSTVNSSQDVSLACRAEAYPAnLTYSWFQDGvnvfhiSR 283 lssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeae l+s r+++ +dg +L+ + qpdD+G YtCv +N + mKIAA1355 284 LQS------RVRILVDG-----SLWLQATQPDDAGHYTCVPSNGfLHPPS 322 asaeLtVq<-* asa LtV mKIAA1355 323 ASAYLTVL 330 V-set: domain 3 of 3, from 236 to 330: score 25.4, E = 0.0013 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + ++ pp+ tv+ ++v+L C + mKIAA1355 236 PPVIVV-PPS----------NSTVNSSQDVSLACRAE-----AYP-- 264 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++ +++W++ ++ ++++i +r++ rvr+ ++ mKIAA1355 265 ANLTYSWFQ----DGVNVFHI-----------------SRLQSRVRILVD 293 pskgdfsLtIsnlqlsDsGtYyCa.........gggtrLtVl<-* +s L ++ q++D G Y+C+++++ +++ + LtVl mKIAA1355 294 GS-----LWLQATQPDDAGHYTCVpsngflhppSASAYLTVL 330 ig: domain 4 of 5, from 347 to 407: score 20.1, E = 0.053 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G + ++C v+ +pp vtW+++g+ l+ + ++s +s mKIAA1355 347 GMRGVIRCPVR-ANPPLLFVTWTKDGQaLQlDKFPGWSLGPEGS--- 389 tsLtitnvtpeDggtYtCvv<-* L i ++ g+Y+C+ mKIAA1355 390 --LIIALGNEDALGEYSCTP 407 ig: domain 5 of 5, from 443 to 498: score 24.0, E = 0.0036 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G + ++Cs+ g+p++ v+W + g +l++ +v+s + mKIAA1355 443 GRELLIPCSA--RGDPPPIVSWAKVGRgLQgQAQVDSNNS------- 480 tsLtitnvtpeDggtYtCvv<-* L+++++t+e g + C + mKIAA1355 481 --LVLRPLTKEAQGRWECSA 498 I-set: domain 3 of 3, from 428 to 514: score 18.6, E = 0.00039 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P F+ +p++ +G + C ++G+P+P VsW K G+ l+ mKIAA1355 428 PAFIDQPkEEYFQEVGRELLIPCSARGDPPPIVSWAKVGRGLQG--- 471 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV +v+ ++ +L+ + +++ G C A+N + ++++s ++ V mKIAA1355 472 ---QAQVDSNN-----SLVLRPLTKEAQGRWECSASNAVARVTTSTNVYV 513 q<-* mKIAA1355 514 L 514 fn3: domain 1 of 2, from 518 to 606: score 43.2, E = 5.7e-09 *->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.. P +tn++v + + + +sW+p +++g +++++v + ++ ++ mKIAA1355 518 PHVVTNVSVVP-LPKGANVSWEPGFDGGYLQRFSV-W-YTPLAKRpd 561 .....wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + +++w++l vp +t+ + gL+++ +Y+++V A+n G+Gp+S mKIAA1355 562 rahhdWVSLAVPIGATHLLVPGLQAHAQYQFSVLAQNKLGsGPFS 606 fn3: domain 2 of 2, from 634 to 718: score 42.9, E = 7e-09 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. +s+P++l++ t+ + l+W+pp+ g ++gY ++ R + + g++ mKIAA1355 634 LSPPRGLVAVR-TPRGVLLHWDPPElIPGRLDGYILEGR-QGSQGWe 678 wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + v gt+ + + gL ++ Ye+r++A + + + +S mKIAA1355 679 ILDQGVAGTEIQLLVPGLIKDVLYEFRLVAFADSYvSDPS 718 Extensin_2: domain 1 of 1, from 757 to 1076: score -118.7, E = 0.072 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy ++++v +++ +l +a + +++p ++ SP s mKIAA1355 757 GVAVLVSILAACLMNRRRAARRHRKRLRQDPPLIF-SPRGKS---GS 799 kSPPPpkkpYvYsSPPPPs..yvykSPPPPkp..yvYkSPPpPkyvYkSP +S P + SP ++ SP P +++ ++ P +P+ SP mKIAA1355 800 HSAPGS------GSPDSVTkfKLQGSPVPSLRqsLLWGEPARPP----SP 839 PpPvykYkSPPP..PthsppPpyvykSPPPPpkkyvykSpPpptPvYkYk p ++ + P P +P P + P ++ + +p P mKIAA1355 840 HPDSPLGRGPLPlePI-CRGPDGRFVMGPTVAPSQEKLCLERPEP----- 883 SPPPPpyvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkkyiyksp + + ++ + +S P P p+ i + mKIAA1355 884 ---------RTSA--KRLAQSFDCSSSSPSG------VPQPL--CITDIS 914 pppephkYvYkSP.PPPpP.YvyesvpeqkikYvYkSPPPPkksYkspsp p +p SP P P P y s p + v PP ++ p+p mKIAA1355 915 PVGQPL-AAVPSPlPGPGPlLQYLSLPFFREMNVDGDWPPLEE--PTPAP 961 pkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyvYkSp p+ S P P+ +S PP P P+ + + mKIAA1355 962 PPDFMDSQPCPT-----SSFLPP----------------PDSPPANLRAV 990 PpPykpptppkiyksPPPPtPvyvYkspPpippik.sssppPvyvYkSpP p ++ +s PP t + ++ p s p +S mKIAA1355 991 LP---GTLMGVGVSSEPPYTALADWTLRERVLPGLlSAAPRGSLTSQSSG 1037 ppvysPPPPyvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPphh<-* + + s P P ++ y ++ P +++S P mKIAA1355 1038 RGSASFLRP--------PSTAPSAGGSYLSPAPGDTSSWASGPERWP 1076 //