hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01247/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1354  ( 679 res)   mbh01247

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        87.8    1.3e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1     112   211 ..     1   114 []    87.8  1.3e-21

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 112 to 211: score 87.8, E = 1.3e-21
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvtlv g+       + ++f++  H+a  a+    S+yFka+f+++
   mKIAA1354   112    CDVTLVPGD-------GEEIFPV--HRAMMASA---SDYFKAMFTGg 146  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    ++++   i l +      v+   ++ +++f+Yt kl+l+++   n+++ 
   mKIAA1354   147 mkekdlmcIKLHG------VNKVGLKKIIDFIYTaKLSLNMD---NLQDT 187  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   Le+A+fl    qi ++ + C+ fl++     
   mKIAA1354   188 LEAASFL----QILpVLDFCKVFLISGV    211  

//