hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh01247/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1354 ( 679 res) mbh01247 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 236.6 3.6e-67 6 BACK BTB And C-terminal Kelch 134.9 1.5e-36 1 BTB BTB/POZ domain 115.1 1.3e-30 1 Kelch_2 Kelch motif 105.0 1.4e-27 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 102 211 .. 1 135 [] 115.1 1.3e-30 BACK 1/1 216 317 .. 1 103 [] 134.9 1.5e-36 Kelch_1 1/6 349 396 .. 1 45 [] 8.4 2.9 Kelch_2 1/6 359 396 .. 1 54 [] 1.2 1.7e+02 Kelch_1 2/6 398 448 .. 1 45 [] 58.7 1.3e-13 Kelch_2 2/6 398 448 .. 1 54 [] 22.3 0.012 Kelch_1 3/6 450 495 .. 1 45 [] 50.9 2.7e-11 Kelch_2 3/6 450 495 .. 1 54 [] 6.7 33 Kelch_1 4/6 497 542 .. 1 45 [] 47.0 4.2e-10 Kelch_2 4/6 497 542 .. 1 54 [] 34.0 3.4e-06 Kelch_1 5/6 544 594 .. 1 45 [] 38.5 1.5e-07 Kelch_2 5/6 544 594 .. 1 54 [] 16.4 0.66 Kelch_1 6/6 596 643 .. 1 45 [] 36.8 5.1e-07 Kelch_2 6/6 596 643 .. 1 54 [] 25.0 0.0017 Alignments of top-scoring domains: BTB: domain 1 of 1, from 102 to 211: score 115.1, E = 1.3e-30 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +++lr +g lcDVtLv gdg ++ f++H+a a++S+YFka+ mKIAA1354 102 FDQLRIEGLLCDVTLVPGDG------EEIFPVHRAMMASASDYFKAM 142 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ftg+ ++e+ + i l +v+ ++ +++fiYt++ls++ mKIAA1354 143 FTGG-----MKEKDLMC--IKLHGVNKVGLKKIIDFIYTAKLSLN----- 180 PssckseenvedlLalAadllqipslvdkCeefliksl<-* ++n++d L++A ++lqi + d C fli mKIAA1354 181 ------MDNLQDTLEAA-SFLQILPVLDFCKVFLISGV 211 BACK: domain 1 of 1, from 216 to 317: score 134.9, E = 1.5e-36 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ + r+A +y++ e+ +++++fil+nF++++++ EFl L++e+L + mKIAA1354 216 CVEVGRIANTYNLIEVDKYVNNFILKNFPALLNTGEFLKLPFERLAF 262 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +Lss++L +sE e+f+A++rW++ + + R +++++L++++R+pL++p+ mKIAA1354 263 VLSSNSLKHCSELELFKAACRWLRLEDP-RMDYAAKLMKNIRFPLMTPQD 311 Llevve<-* L ++v+ mKIAA1354 312 LINYVQ 317 Kelch_1: domain 1 of 6, from 349 to 396: score 8.4, E = 2.9 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm + ++ + ++ GG+ ++ + ++ +YD + ++W+ l++m mKIAA1354 349 QSDRTAIRSDSTHLVTLGGVLRqqlVVSKELRMYDERAQEWKSLAPM 395 p<-* mKIAA1354 396 D 396 Kelch_2: domain 1 of 6, from 359 to 396: score 1.2, E = 1.7e+02 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +++ +++ + + +vv+ l+ +d++ ++W mKIAA1354 359 STHLVTLGGVLRQQLVVSKE----------------LRMYDERAQEW 389 eklpalp<-* + l++++ mKIAA1354 390 KSLAPMD 396 Kelch_1: domain 2 of 6, from 398 to 448: score 58.7, E = 1.3e-13 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl pR+ +g++v+++ +Yv+GG+++ ++++++++++v+++Dp+ n+W ++ mKIAA1354 398 PRYQHGIAVIGNFLYVVGGQSNydtkgkTAVDTVFRFDPRYNKWMQV 444 psmp<-* +s++ mKIAA1354 445 ASLN 448 Kelch_2: domain 2 of 6, from 398 to 448: score 22.3, E = 0.012 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pry+h ++v+g+ lyvvGG + ++ g + +++ ++dp+ n+W mKIAA1354 398 PRYQHGIAVIGNFLYVVGGQ---SNYDTKGKTAVDTVFRFDPRYNKW 441 eklpalp<-* +++l mKIAA1354 442 MQVASLN 448 Kelch_1: domain 3 of 6, from 450 to 495: score 50.9, E = 2.7e-11 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++ +l+g++Y++GG++ l +ve+Y+p+ n+W++++ m+ mKIAA1354 450 KRTFFHLSALKGHLYAVGGRSAaGELATVECYNPRMNEWSYVAKMS 495 -* mKIAA1354 - - Kelch_2: domain 3 of 6, from 450 to 495: score 6.7, E = 33 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r ++ + g ly vGG+ + + ++ +++p+ n+W mKIAA1354 450 KRTFFHLSALKGHLYAVGGR--------SAAGELATVECYNPRMNEW 488 eklpalp<-* ++++++ mKIAA1354 489 SYVAKMS 495 Kelch_1: domain 4 of 6, from 497 to 542: score 47.0, E = 4.2e-10 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< p +g++ +v++g++Y+ GG + +++ n ++Dp+t++Wt+ ++m+ mKIAA1354 497 PHYGHAGTVYGGLMYISGGITHdTFQNELMCFDPDTDKWTQKAPMT 542 -* mKIAA1354 - - Kelch_2: domain 4 of 6, from 497 to 542: score 34.0, E = 3.4e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p+y+ha +v+gg +y++GG+ d +++ l+++dp+t +W mKIAA1354 497 PHYGHAGTVYGGLMYISGGI--------THDTFQNELMCFDPDTDKW 535 eklpalp<-* + +++ mKIAA1354 536 TQKAPMT 542 Kelch_1: domain 5 of 6, from 544 to 594: score 38.5, E = 1.5e-07 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl R ++++++++k+YviGG +++++ + s+e+Y+p+ ++Wt++ mKIAA1354 544 VRGLHCMCTVGDKLYVIGGNHFrgtsdyDDVLSCEYYSPTLDQWTPI 590 psmp<-* + m mKIAA1354 591 AAML 594 Kelch_2: domain 5 of 6, from 544 to 594: score 16.4, E = 0.66 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+ h ++++g+klyv+GG + rgt + d+++s ++ p +W mKIAA1354 544 VRGLHCMCTVGDKLYVIGGN--HFRGTSDYDDVLS-CEYYSPTLDQW 587 eklpalp<-* ++++a+ mKIAA1354 588 TPIAAML 594 Kelch_1: domain 6 of 6, from 596 to 643: score 36.8, E = 5.1e-07 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm s +gv+v+++kiYv+GGy+ +++ + v +YDpe+++W+k+ ++ mKIAA1354 596 GQSDVGVAVFENKIYVVGGYSWnnrCMVEIVQKYDPEKDEWHKVFDL 642 p<-* p mKIAA1354 643 P 643 Kelch_2: domain 6 of 6, from 596 to 643: score 25.0, E = 0.0017 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +++ + ++v ++k+yvvGG+ + n+ + ++ +dpe+ +W mKIAA1354 596 GQSDVGVAVFENKIYVVGGY------SWNNRCMVEIVQKYDPEKDEW 636 eklpalp<-* +k+ +lp mKIAA1354 637 HKVFDLP 643 //