hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp05187/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1348  ( 539 res)   mbp05187

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PP2C     Protein phosphatase 2C                         124.6    1.8e-33   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PP2C       1/1     180   464 ..     1   305 []   124.6  1.8e-33

Alignments of top-scoring domains:
PP2C: domain 1 of 1, from 180 to 464: score 124.6, E = 1.8e-33
                   *->ldvgvsrmqgwrksmeDahialknlnssssgkdswsffavfDGhgGs
                      l+ ++ ++ + +  +++  +++++  s  +++     + +   ++ +
   mKIAA1348   180    LEQMEEATENMKPLLPILRWLKHPGDSI-YKDVTSVHLDHLRVYWQE 225  

                   qaakyagkhlhktilaerksfpegdpwEmklsdledalkesfleadtdee
                    +   ++  l   + a+ +sf  +        d +  l  ++     de+
   mKIAA1348   226 LLDLHMEMGLS-IEEALMYSFQRL--------DSDISLEIQAPL--EDEV 264  

                   lrsaeassankvltkedlssGsTAvvalirgnkklLyVANvGDSRavLcr
                   +r          l+ ++  sG+TA++a+++g +  L+VAN+GD+Ra+L+ 
   mKIAA1348   265 TRN---------LSLQVAFSGATACMAHVNGVH--LHVANAGDCRAILGV 303  

                   ngnaikw.avtLteDHkPsnedEreRIeaaGG......fvsrvsgngRvn
                   +++++ w+  +Lt DH++ ne+E++R++++++++++++ ++    ++R++
   mKIAA1348   304 QEENGAWsCLPLTCDHNAWNEAELSRLKREHPesedrtLII----DDRLL 349  

                   GvfLavSRAfGDfelKpgsklgpees.l.e.a.ny.eyiks.pe....ql
                   Gv L++ RAfGD++lK+ + l+ +    + +++ ++ y + +p   ++++
   mKIAA1348   350 GV-LMPCRAFGDVQLKWSKELQRNVLaRgFdTeALnIYQFTpPHyytpPY 398  

                   VtaePdvtsstdltpdkDeFliLAcDGLWDvvsdqevvdivrselsdgn.
                    ta P+vt +++l+ + D+Fl+LA+DGLWD++ +++vv +v  +ls+ ++
   mKIAA1348   399 LTAKPEVT-YHRLRRQ-DKFLVLASDGLWDMLGNEDVVRLVVGHLSKVGr 446  

                   rsagdpmeaaeklvdeaiargseDni<-*
                    +   p     +l +     g + +    
   mKIAA1348   447 HK---P-----DLDQRPANLGLMQSL    464  

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