hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj09039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1346  ( 998 res)   mfj09039

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP1     Thrombospondin type 1 repeats                  130.3    2.1e-34   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP1       1/3     593   645 ..     1    66 []    61.9  8.1e-14
TSP1       2/3     888   941 ..     1    66 []    43.6  2.6e-08
TSP1       3/3     942   998 .]     1    66 []    40.2  2.7e-07

Alignments of top-scoring domains:
TSP1: domain 1 of 3, from 593 to 645: score 61.9, E = 8.1e-14
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w++W++W++CS +tCGgG++     +R        c++p p  +ngg
   mKIAA1346   593    WGPWGPWGDCS-RTCGGGVQ---YTMR-------ECDNPVP--KNGG 626  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C++++  +r Cn +    +Cp   
   mKIAA1346   627 KYCEgkrvRYRSCNIE----DCP    645  

TSP1: domain 2 of 3, from 888 to 941: score 43.6, E = 2.6e-08
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +  +eW++CS +tCG+G     +++R+ +    c + ++     + 
   mKIAA1346   888    EWVIEEWGECS-KTCGSG-----WQRRVVQ----CRDING----HPA 920  

                   epCs......EtrpCntqpnLqpCp<-*
                   ++C ++ ++  trpC       pCp   
   mKIAA1346   921 SECAkevkpaSTRPCADL----PCP    941  

TSP1: domain 3 of 3, from 942 to 998: score 40.2, E = 2.7e-07
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      +++ ++WSpCS +tCG+G      ++Rt +    c+s+ ++      
   mKIAA1346   942    HWQVGDWSPCS-KTCGKG-----YKKRTLK----CVSHDGG--VLSN 976  

                   epCs.......EtrpCntqpnLqpCp<-*
                   e+C++ +++++    C++      C+   
   mKIAA1346   977 ESCDplkkpkhYIDFCTLT----QCS    998  

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