hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj09039/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1346 ( 998 res) mfj09039 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ADAM_spacer1 ADAM-TS Spacer 1 191.1 1.7e-53 1 Pep_M12B_propep Reprolysin family propeptide 103.9 3e-27 1 TSP_1 Thrombospondin type 1 domain 68.5 1.4e-16 3 Reprolysin Reprolysin (M12B) family zinc metallo 10.7 4.8e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pep_M12B_propep 1/1 123 243 .. 1 119 [] 103.9 3e-27 Reprolysin 1/1 289 498 .. 1 203 [] 10.7 4.8e-13 TSP_1 1/3 594 644 .. 1 55 [] 47.2 3.8e-10 ADAM_spacer1 1/1 756 874 .. 1 128 [] 191.1 1.7e-53 TSP_1 2/3 887 940 .. 1 55 [] 17.6 0.0032 TSP_1 3/3 943 997 .. 1 55 [] 19.9 0.0017 Alignments of top-scoring domains: Pep_M12B_propep: domain 1 of 1, from 123 to 243: score 103.9, E = 3e-27 *->hLeknrsllapdftvttYdedGtlvteepliq.d.dHCyYqGyVeGy +L++ ++lap+ft+ t +++ +++++++d HC+Y G+V G+ mKIAA1346 123 KLQPDSGFLAPGFTLQTVGRSPGSEAQHLDPTgDlAHCFYSGTVNGD 169 pnSaVslSTCsGgLRGilqlenlsYgIEPlessdgf.eHiiYqienlkte p+Sa++lS C G RG ++l++++++I+P +++++++ ++++e + mKIAA1346 170 PGSAAALSLCEG-VRGAFYLQGEEFFIQPAPGVATErLAPAVPEEESSAR 218 pspcgecgslstsadssygirsass<-* p+ + ++ + +s ++++g++ +++ mKIAA1346 219 PQFHILRRRRRGSGGAKCGVMDDET 243 Reprolysin: domain 1 of 1, from 289 to 498: score 10.7, E = 4.8e-13 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrpqLNIr. rY+E ++V+D m + +g +++ + ++ + +Y+ Ir+ mKIAA1346 289 RYVETMLVADQSMADFHG---SGLKHYLLTLFSVAARFYKH-PSIRn 331 .VvLvgLEIWs..dgDk.InvqsdandTLhsFgeWRetdL......lkrk +++Lv + I +++k+ +v+s+a TL++F +W++++ +++++++++ mKIAA1346 332 sISLVVVKILViyEEQKgPEVTSNAALTLRNFCNWQKQHNspsdrdPEHY 381 sHDnAqLLtgid....fdgntiGaAyvggmCspkrSvGVvqdhspivllv D A+L+t d ++++ t+G+A vg++C+p+rS+ V++d l mKIAA1346 382 --DTAILFTRQDlcgsHTCDTLGMADVGTVCDPSRSCSVIEDD---GLQA 426 AvtMAHELGHNLGmtHDdkntdgCtCe.....gggsCIMnpvas...ssp A t AHELGH + m+HDd + +C + ++ g+s M++++s+ ++s mKIAA1346 427 AFTTAHELGHVFNMPHDDAK----HCAslngvTGDSHLMASMLSsldHSQ 472 skKkFSnCSkddyqkFltkqkpqCLlNkP<-* + S CS +Fl ++ + CL +kP mKIAA1346 473 PW---SPCSAYMVTSFLDNGHGECLMDKP 498 TSP_1: domain 1 of 3, from 594 to 644: score 47.2, E = 3.8e-10 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +pW++W +CS TCG+G++ R c++p+P+ gg+ C+g+ ++ + mKIAA1346 594 GPWGPWGDCSRTCGGGVQYTMRECDNPVPK-NGGKYCEGKRVR--YR 637 aCdmmdkC<-* C + + C mKIAA1346 638 SC-NIEDC 644 ADAM_spacer1: domain 1 of 1, from 756 to 874: score 191.1, E = 1.7e-53 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA k+++G+ t ++ +GY+d+vtIPaGA++I+++++++ g+rn++++LA mKIAA1346 756 KKMSGIVTSTR--PGYHDIVTIPAGATNIEVKHRNQRGSRNNGSFLA 800 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt ++++d G+ yiLNGn+t+s+ +++++++GTv++Ys+ s + a+E+++ mKIAA1346 801 IRAAD-GT-YILNGNFTLSTLEQDLTYKGTVLRYSG-SSA----ALERIR 843 atGPtnepLivqvLfqggapnpgikYeYtiP<-* +++P++epL++qvL++g+a +p+ik++Y++ mKIAA1346 844 SFSPLKEPLTIQVLMVGHALRPKIKFTYFMK 874 TSP_1: domain 2 of 3, from 887 to 940: score 17.6, E = 0.0032 *->spW..seWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqel s+W +eW +CS+TCG+G + R+ c ++ + C +v + mKIAA1346 887 SEWviEEWGECSKTCGSGWQRRVVQCRDI---NgHPASECAKEVKPA 930 eteaCdmmdkC<-* t++C +C mKIAA1346 931 STRPC-ADLPC 940 TSP_1: domain 3 of 3, from 943 to 997: score 19.9, E = 0.0017 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... + + WSpCS+TCGkG + R+ +c+s ++g+ + + ++ ++ mKIAA1346 943 WQVGDWSPCSKTCGKGYKKRTLKCVS-----HDGGVLSNESCDplkk 984 ..leteaCdmmdkC<-* ++ + C + C mKIAA1346 985 pkHYIDFC-TLTQC 997 //