hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj19322/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1344  ( 839 res)   mfj19322

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Thioredoxin Thioredoxin                                 -11.8     0.0016   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Thioredoxin   1/1     412   517 ..     1   114 []   -11.8   0.0016

Alignments of top-scoring domains:
Thioredoxin: domain 1 of 1, from 412 to 517: score -11.8, E = 0.0016
                   *->vvvvltdenFdeevlkaksdkpVLVdFyApWCGpCKmlAPe..yekl
                        v+lt e+F+    ++    + +V FyA+W  +   +A  ++y   
   mKIAA1344   412    LSVELTEETFNT--TVM--TSDSIVLFYATW--HAVSMAFLqsYIDV 452  

                   AqeykgesddvkfaKVDaDenpkdlAskygVrgfPTlkffknGkkepvdy
                   A ++kg+s+ + +  +++     d++ k +V++fP  k++k G+ +pv+y
   mKIAA1344   453 AIKLKGRST-ILLTRINCADWS-DICTKQNVTAFPVVKLYKEGE-SPVSY 499  

                   vgGArtkddLvafikkhlg<-*
                    g      dL +fi+ +     
   mKIAA1344   500 AGM-LATKDLLKFIQLNKI    517  

//