hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp04105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1343  ( 395 res)   mbp04105

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SANT     SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding d    42.0    7.9e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SANT       1/1      85   133 ..     1    53 []    42.0  7.9e-08

Alignments of top-scoring domains:
SANT: domain 1 of 1, from 85 to 133: score 42.0, E = 7.9e-08
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                        +eWt e+  l+++a   +G    + +++I ++lp +t  ++++++
   mKIAA1343    85    FPDEWTVEDKVLFEQAFSFHG----KSFHRIQQMLPDKTIASLVKYY 127  

                   rnllkp<-*
                   + ++k+   
   mKIAA1343   128 YSWKKT    133  

//