hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp04105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1343  ( 395 res)   mbp04105

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
ELM2            ELM2 domain                              58.9    1.1e-13   1
Myb_DNA-binding Myb-like DNA-binding domain              44.7    2.1e-09   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
ELM2              1/1       1    61 [.     1    81 []    58.9  1.1e-13
Myb_DNA-binding   1/1      86   131 ..     1    65 []    44.7  2.1e-09

Alignments of top-scoring domains:
ELM2: domain 1 of 1, from 1 to 61: score 58.9, E = 1.1e-13
                   *->geIrVGskyQAdvPefCRlpeterdeseeredLTkkedeekldelvW
                        +rVG +yQA++Pef  +p     +++++           +++lvW
   mKIAA1343     1    --MRVGAEYQARIPEF--DPGATKYTDKDN-----------GGMLVW 32   

                   sPeDsqnqlddekidqylrlarslkkslgtfara<-*
                   sP    +++ d+k+d+y++ a++  k+++++++a   
   mKIAA1343    33 SPY---HSIPDAKLDEYIAIAKE--KHGYNVEQA    61   

Myb_DNA-binding: domain 1 of 1, from 86 to 131: score 44.7, E = 2.1e-09
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt e++ l+++a++ hGk            +++I ++l+     
   mKIAA1343    86    PDEWTVEDKVLFEQAFSFHGKS-----------FHRIQQMLP----- 116  

                   nvlgrtaeqcklryykyk<-*
                      ++t  +++ +yy +k   
   mKIAA1343   117 ---DKTIASLVKYYYSWK    131  

//