hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid23032/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1342  ( 499 res)   mid23032

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     162.3    4.8e-44   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2     243   347 ..     1    92 []    80.1  2.7e-19
C2         2/2     377   491 ..     1    92 []    82.2  6.1e-20

Alignments of top-scoring domains:
C2: domain 1 of 2, from 243 to 347: score 80.1, E = 2.7e-19
                   *->tLtvkiisArnLp.........DPYVkvs.........kTkvvkktl
                       + v+i++A++Lp  +  + ++DPY+k++  + ++++ kT+v +ktl
   mKIAA1342   243    AFVVNIKEAQGLPamdeqsmtsDPYIKMTilpekkhrvKTRVLRKTL 289  

                   sgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrvti
                       Pv++E   tF+F+ +p ++ ++ +L+++V ++++ +++d+iG+v i
   mKIAA1342   290 ---DPVFDE---TFTFYGIPyphiqeLsLHFTVLSFdrfsrdDVIGEVLI 333  

                   ppnnahqhsadglihlsell.ggrh.kl<-*
                   p              ls ++ ++++      
   mKIAA1342   334 P--------------LSGIElSDGKmLM    347  

C2: domain 2 of 2, from 377 to 491: score 82.2, E = 6.1e-20
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                      tLtv +++Ar+Lp+++ ++ +DPYVkv   + +++ +++kT+v+k+t
   mKIAA1342   377    TLTVVVLKARHLPksdvsglsDPYVKVNlyhakkriskkKTHVKKCT 423  

                   lsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvti
                       N v+nE    F+F++p+++ ++ ++e+ V D+++++++++iGr+++
   mKIAA1342   424 P---NAVFNE---LFVFDIPCesleeIsVEFLVLDSergsrnEVIGRLVL 467  

                   ppnnahqhsadg..lihlsell.ggrh.kl<-*
                   +       +a+g++ +h++e+++ +r++     
   mKIAA1342   468 G------ATAEGsgGGHWKEICdFPRRqIA    491  

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