hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid23032/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1342  ( 499 res)   mid23032

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                      231.8    9.6e-66   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2     244   332 ..     1    88 []   120.2  3.8e-32
C2         2/2     378   466 ..     1    88 []   113.7  3.4e-30

Alignments of top-scoring domains:
C2: domain 1 of 2, from 244 to 332: score 120.2, E = 3.8e-32
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl
                       +V+++eA++Lp++D+ + +sDPY k++++++kk ++ kT+v +ktl
   mKIAA1342   244    FVVNIKEAQGLPAMDEQSMTSDPYIKMTILPEKK-HRVKTRVLRKTL 289  

                   NPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   +Pv++EtFtF+++p+p+ qe +L+++V  +drf+rdd++Gev    
   mKIAA1342   290 DPVFDETFTFYgIPYPHIQElSLHFTVLSFDRFSRDDVIGEVL    332  

C2: domain 2 of 2, from 378 to 466: score 113.7, E = 3.4e-30
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qkkkTkvikkt
                      L+V v++A++Lp+ D ++g+sDPYVkv l   kk+ +kkkT+v+k t
   mKIAA1342   378    LTVVVLKARHLPKSD-VSGLSDPYVKVNLYHAKKRiSKKKTHVKKCT 423  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                    N v+NE F+F++p+++l+e ++e+ V D+ r +r++++G+ +   
   mKIAA1342   424 PNAVFNELFVFDIPCESLEEiSVEFLVLDSERGSRNEVIGRLV    466  

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